View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13003_high_6 (Length: 284)
Name: NF13003_high_6
Description: NF13003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13003_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 8e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 69 - 261
Target Start/End: Original strand, 2946735 - 2946927
Alignment:
| Q |
69 |
tacattcttattttaaattatggatatgcataaagctttcttacataaatactccttttttctatgcattaagttcaagcacaaagcttgttaaatgctt |
168 |
Q |
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| T |
2946735 |
tacattcttattttaaaatatggatatgcataaagctttcttacataaatactccttttttctatgcattaagttcaagcacaaagcttgttaaatgctt |
2946834 |
T |
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| Q |
169 |
ccaaaaccaccaacttttgatttaggaaattagtgcatttttcaataggatcaaaaacccaaataggaaaatatattttaattaatgaggggg |
261 |
Q |
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| T |
2946835 |
ccaaaaccaccaacatttgatttaggaaattagggcatttttcaataggatcaaaaacccaaataggaaaatatattttaattaatgaggggg |
2946927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 243
Target Start/End: Complemental strand, 3353969 - 3353801
Alignment:
| Q |
79 |
ttttaaattatggatatgcataaagctttcttacataaatactccttttttctatgcattaagttcaagcacaaagcttgttaaatgcttccaaaaccac |
178 |
Q |
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| T |
3353969 |
ttttaaattatcgatgtgcataaagctttcttaggtaa-tactccttttt-ctatgcattaagctcaatcacaatgcttgttaaatgcttccaaaaccag |
3353872 |
T |
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| Q |
179 |
caacttttgatttaggaa-----atta--gtgcatttttcaataggatcaaaaacccaaataggaaaatata |
243 |
Q |
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| T |
3353871 |
caacatttgattcaggaaaaagcactaaggtgtatctttcaataggat-aaaaacccaaataggaaaatata |
3353801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 3354189 - 3354135
Alignment:
| Q |
1 |
gtcacaaaggagcaataaaactggaaaagcacagtgaaaaaacttgtatggataa |
55 |
Q |
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| T |
3354189 |
gtcacaaagcagtaataacattggacaagcacagtgaaaaaacttgtatggataa |
3354135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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