View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13003_low_2 (Length: 755)
Name: NF13003_low_2
Description: NF13003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13003_low_2 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 216 - 726
Target Start/End: Complemental strand, 33493115 - 33492611
Alignment:
| Q |
216 |
ggtaaaatttggtaaatttactagtttatgaattttgaatgttgtgatcgaattcgagggttcacacctttttctgatgcattttgacctaaaagtgatc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33493115 |
ggtaaaatttggtaaatttactagtttatgaattttgaatgttgtgatcgaattcgagggttcacacctttttctgatgcattttgacctaaaagtgatc |
33493016 |
T |
|
| Q |
316 |
aagcctcggcttctgattgtgagtctcatggtgaaaatcacgttttgttttgctaaatttggttgattagtaattcaaccgattgaatgttgttattgga |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
33493015 |
aagcctcggcttctgattgtgagtctcatggtgaaaatcacgttttgttttgctaaatttggttgattagtaattcaactg-----atgttgttattgga |
33492921 |
T |
|
| Q |
416 |
taatttaagaataaaattagtttacaaatattatgtagnnnnnnnagatgaaatattatgcagtttgatttcacgactatattatcttgttgtaattgac |
515 |
Q |
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||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33492920 |
taatttaagaataaaattagtttactactattatgtagtttttttagatgaaatattatgcagtttgatttcacgactatattatcttgttgtaattgac |
33492821 |
T |
|
| Q |
516 |
atgcttgtacattgattggatttgacgttgttatatctcataaattgtcatgcttgatcatagttttaaatcacggttgcggtcacttataaagttgggt |
615 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||| |||||||||||| ||||||||||||| |
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| T |
33492820 |
atgcttatacattgattggatttgacgttgttatatctcataaattgccatgcttcatcatggttttaaatcgcggttgcggtcatctataaagttgggt |
33492721 |
T |
|
| Q |
616 |
gtcgcagttgcgtttatgatggttgcaattaccgttgttgcgccgtgaaataattttaaattatcaccaaactatataaagcgaaaccacgatgctacta |
715 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| |
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| T |
33492720 |
gtagcagttgcgtttatgatggttgcaattaccgttgttgcgccgtgaaataattttaaattttca-caaactatataaagcgaaaccacgatgttacta |
33492622 |
T |
|
| Q |
716 |
cactatttatc |
726 |
Q |
| |
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||| ||||||| |
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| T |
33492621 |
cacaatttatc |
33492611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 33493329 - 33493138
Alignment:
| Q |
1 |
gtcaaccggagcaatgtcgctacaaaaaagtcacgttctgctgcaactgttcgccgtctaaaaatgtacaaaaccaaacccgatcacaatcacaaccgta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
33493329 |
gtcaaccggagcaatgtcgctacaaaaaagtcacgttctgctgcaactgttcgccgtctaaaaatgtacaaaagcaaacccgttcacaatcacaaccgta |
33493230 |
T |
|
| Q |
101 |
agggaaaagcttgagnnnnnnnagagaagaatatgcctatgtgatttctcaataatcaccagaaggtttgtttcaaggattttgtgctttca |
192 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33493229 |
agggaaaagcttgagtttttttagagaagaatttgcctatgtgatttctcaataatcaccagaaggtttgtttcaaggattttgtgctttca |
33493138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 650 - 726
Target Start/End: Complemental strand, 3975444 - 3975369
Alignment:
| Q |
650 |
ttgttgcgccgtgaaataattttaaattatcaccaaactatataaagcgaaaccacgatgctactacactatttatc |
726 |
Q |
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||||||| |||||||| |||||||||| |||| ||||||||||||| || ||||| || ||||||||||||||||| |
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| T |
3975444 |
ttgttgcagcgtgaaatgattttaaattttcac-aaactatataaagtgacaccaccatactactacactatttatc |
3975369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 649 - 726
Target Start/End: Complemental strand, 32520202 - 32520126
Alignment:
| Q |
649 |
gttgttgcgccgtgaaataattttaaattatcaccaaactatataaagcgaaaccacgatgctactacactatttatc |
726 |
Q |
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||||||||| ||||||||||||||||||| |||| ||||||||||||| || ||||| |||||| ||||||||||||| |
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| T |
32520202 |
gttgttgcggcgtgaaataattttaaattttcac-aaactatataaagtgacaccaccatgctattacactatttatc |
32520126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 659 - 725
Target Start/End: Complemental strand, 6348 - 6283
Alignment:
| Q |
659 |
cgtgaaataattttaaattatcaccaaactatataaagcgaaaccacgatgctactacactatttat |
725 |
Q |
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| T |
6348 |
cgtgaaataattttaaattttcaa-aaactatataaagcgacaccagcatgctactacacaatttat |
6283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 659 - 725
Target Start/End: Complemental strand, 7893 - 7828
Alignment:
| Q |
659 |
cgtgaaataattttaaattatcaccaaactatataaagcgaaaccacgatgctactacactatttat |
725 |
Q |
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||||||||||||||||||| ||| |||||||||||||||| |||| |||||||||||| |||||| |
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| T |
7893 |
cgtgaaataattttaaattttcaa-aaactatataaagcgacaccagcatgctactacacaatttat |
7828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 2772345 - 2772426
Alignment:
| Q |
1 |
gtcaaccggagcaatgtcgctacaaaaaagtcacgttctgctgcaactgttcgccgtctaaaaatgtacaaaaccaaacccg |
82 |
Q |
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|||||| |||||||||||| || |||| ||| || |||||||| || |||||||||| |||||||||| ||||||||||| |
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| T |
2772345 |
gtcaacaggagcaatgtcgttaaaaaagagtggcggtctgctgccaccattcgccgtcttaaaatgtacagaaccaaacccg |
2772426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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