View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13003_low_5 (Length: 405)
Name: NF13003_low_5
Description: NF13003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13003_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 12640344 - 12639973
Alignment:
| Q |
11 |
cacagaactattaggacacagatcaattttaggccaataaataagcagtatgaattattataaattattgagtttcggacgaaatataagacaggagcat |
110 |
Q |
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| T |
12640344 |
cacacaactattaggacacagatcaattttaggccaataaataagcagtatgaattattataaattattgagtttcggacgaaatataagacaggagcat |
12640245 |
T |
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| Q |
111 |
tagatgaaatgaaacactggacttccaaaggaacttttcaggaaatagtttctacctatagcgccaccatagcagcctgctattagcaggcatcccctca |
210 |
Q |
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| T |
12640244 |
tagatgaaatgaaacactggacttccaaaggaacttttcaggaaatagtttctacctatag--------tagcagcctgctattagcaggcatcccctca |
12640153 |
T |
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| Q |
211 |
caaattggctatggcaattgtcgaaaaatccgccacgccctggcagccatttaacactgattttcacttcatttttcgtaacaagtgatagggaattttc |
310 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12640152 |
caaattggctatggcggttgtcgaaaaatccgccacgccctggcagccatttaacactgattttcacttcatttttcgtaacaagtgatagggaattttc |
12640053 |
T |
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| Q |
311 |
aaaactgtaggggtgcttactatatgttacagttgtagggttgtaggcagcatatagttcttgcctctggtatatgtttt |
390 |
Q |
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| T |
12640052 |
aaaactgtaggggtgcttactatatgttacagttgtagggttgtaggcagcatatagttcttgcctctggtatatgtttt |
12639973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 11302801 - 11302737
Alignment:
| Q |
202 |
atcccctcacaaattggctatggcaattgtcgaaaaatccgccacgccctggcagccatttaaca |
266 |
Q |
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| T |
11302801 |
atcccttcacaaattgcctatggcagttgtcgaaaaatccaccacgccatggacgccatttaaca |
11302737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 34206215 - 34206148
Alignment:
| Q |
199 |
ggcatcccctcacaaattggctatggcaattgtcgaaaaatccgccacgccctggcagccatttaacac |
267 |
Q |
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| T |
34206215 |
ggcatcccttcacaaattgactatggcgattgt-gaaaaatccgccacacactggccgccatttaacac |
34206148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 249
Target Start/End: Original strand, 18947986 - 18948033
Alignment:
| Q |
202 |
atcccctcacaaattggctatggcaattgtcgaaaaatccgccacgcc |
249 |
Q |
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||||| ||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
18947986 |
atcccttcacaaattggctatggcagttgacgaaaaatccgccacgcc |
18948033 |
T |
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