View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13003_low_9 (Length: 241)
Name: NF13003_low_9
Description: NF13003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13003_low_9 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 33 - 241
Target Start/End: Original strand, 47108560 - 47108767
Alignment:
| Q |
33 |
caacaatatatttatttcaaatcaagcgtgaattttcatgttgataggaacaattaggaaacgaatgcaaacattccaaacacaatattataaaaggatt |
132 |
Q |
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| T |
47108560 |
caacaatatatttatttcaaatcaagcgtgaattttcatgttgataggaacaattaggaaacaaatgcaaacattccaaacacaatattataaaaggatt |
47108659 |
T |
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| Q |
133 |
attttgctttgtgacttacaccgtagagtgcagtatttgttagaggattcatcttttgaaagaaggtcctagagtgagattgtaacacttatcagaatca |
232 |
Q |
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| T |
47108660 |
attttgctttgtaacttacaccgtagagtgcagtatttgttagaggattcatc-tttgaaagaaggtcctagagtgagattgtaacacttatcagaatca |
47108758 |
T |
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| Q |
233 |
ggatccgcc |
241 |
Q |
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| T |
47108759 |
ggatccgcc |
47108767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 34 - 241
Target Start/End: Original strand, 48935779 - 48935985
Alignment:
| Q |
34 |
aacaatatatttatttcaaatcaagcgtgaattttcatgttgataggaacaattaggaaacgaatgcaaacattccaaacacaatattataaaaggatta |
133 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
48935779 |
aacaatatatttatttcaaatcaagcatgaattttcatgttgataggaacaattaggaaacaaatgaaaacattccaaacacaatattataaaaggatta |
48935878 |
T |
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| Q |
134 |
ttttgctttgtgacttacaccgtagagtgcagtatttgttagaggattcatcttttgaaagaaggtcctagagtgagattgtaacacttatcagaatcag |
233 |
Q |
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| T |
48935879 |
ttttgctttgtaacttacaccgtagagtgcagtatttgttataggattcatc-tttgaaagaaggtcctagagtgagattgtaacactcatcagaatcag |
48935977 |
T |
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| Q |
234 |
gatccgcc |
241 |
Q |
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| T |
48935978 |
gatccgcc |
48935985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 36969901 - 36969680
Alignment:
| Q |
3 |
aatatattagagaagccaaattnnnnnnnncaacaatatatttatttcaaatcaagcgtgaattttcatgttgataggaacaattaggaaacgaatgcaa |
102 |
Q |
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| T |
36969901 |
aatatattatagaagccaaattaaaaaaagcaacaatatatttatgtccaatcaagcgtgaattttcatgttgataggaacaattaggaaacgaatgcaa |
36969802 |
T |
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| Q |
103 |
acattccaaacacaatattataaaaggattattttgctttgtgacttacaccgtagagtgcagtatttgttagaggattcatcttttgaaagaaggtcct |
202 |
Q |
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| T |
36969801 |
acattccaaacacaatattataaaaggattattttgctttgtgacttacaccgtagagtgcagtatttgttagaggattcatc-tttgaaagaaggttct |
36969703 |
T |
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| Q |
203 |
agagtgagattgtaacacttatc |
225 |
Q |
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| T |
36969702 |
agagtgagattgtaacacttatc |
36969680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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