View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13004_high_2 (Length: 543)
Name: NF13004_high_2
Description: NF13004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13004_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Complemental strand, 42630080 - 42629565
Alignment:
| Q |
1 |
agaagttcctataatcatgtttaattannnnnnnnngggggaaaattcactttcatatataaatttgagctaagggttatgggagtttgaaagtcccgaa |
100 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42630080 |
agaagttcccataatcatgtttaattattttttttggggggaaaattcactttcatatataaatttgagctaagggttatgggagtttgaaagtcccgaa |
42629981 |
T |
|
| Q |
101 |
ttcaaaaccaaataaaggagnnnnnnnctagtctattaatctaaaaactaatctctcccactctcattgctctctcaatgaatcagaacctagaaatgta |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42629980 |
ttcaaaaccaaataaaggagaaaaaaactagtctattaatctaaaaactaatctctcccactctcattgctctctcaatgaatcagaacctagaaatgta |
42629881 |
T |
|
| Q |
201 |
agtcaaagaaagtagaaaatcaacacatattagtgnnnnnnnggtgtcgctgaatgaagattggttgaatttggtctcccagacttctttcaccactgta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42629880 |
agtcaaagaaagtagaaaatcaacacatattagtgtttttttggtgtcgctgaatgaagattggttgaatttggtctcccagacttctttcaccactgta |
42629781 |
T |
|
| Q |
301 |
ccgccgcttcccgcatgtgacttactttcatctcactcgattagaaactcatcttccatcgtcgaacctaaaactcatcttcaaattccctaaccactca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42629780 |
ccgccgcttcccgcatgtgacttactttcatcgcac--gtttagaaactcatcttccatcgtcgaacctaaaactcatcttcagattccctaaccactca |
42629683 |
T |
|
| Q |
401 |
atgactatgagtatatggattaagagtagaaatcttgaactcggtcaatagaaacaaaaattagtacaacaatgttatctacctccattcaagcaaactt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42629682 |
atgactatgagtatatggattaagagtagaaatcttgaactcggtcaatagaaacaaaaattagtacaacaatgttatctacctccattcaagcaaactt |
42629583 |
T |
|
| Q |
501 |
gacggttaaattattaag |
518 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
42629582 |
gacggttaaattattaag |
42629565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University