View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13004_high_4 (Length: 484)
Name: NF13004_high_4
Description: NF13004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13004_high_4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 253 - 484
Target Start/End: Complemental strand, 9500397 - 9500167
Alignment:
| Q |
253 |
ttcaggcatagttgataaatcaataggatagggcttaaaattgttacatacacaaatcataaaatatatttttgataattgatatgtcaactgaagctta |
352 |
Q |
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| T |
9500397 |
ttcaggcatagttgataaatcaataggatagggcttaaaattgttacatacacaaatcataaaatatatttt-gataattgatatgtcaactgaagctta |
9500299 |
T |
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| Q |
353 |
tgcagacaactcgagtaacttataatacatgcatataaatgctcaaaaattgaagaaacaaaattgaaggcataatgttaaatcaatacgacaggtctac |
452 |
Q |
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| T |
9500298 |
tgcagacaactcgagtaacttataatacatgcatataaatgctcaaaaattgaagaaaaaaatttgaaggcgtaatgttaaatcaatacgacagggctac |
9500199 |
T |
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| Q |
453 |
caagtacaaactacacaacatatataagaaag |
484 |
Q |
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| T |
9500198 |
caagtacaaactacacaacatatataagaaag |
9500167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 9500645 - 9500426
Alignment:
| Q |
3 |
cctagaacctagtcaagtttcactttagctgaagggtggagattggtttaatctccacccaagcagagagcaataatcatagttgtcaatcccaaataga |
102 |
Q |
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| T |
9500645 |
cctagaacctagtcaagtttcactttagctgaagggtggagattggtttaatctccacccaagcagagagcaataatcatagttgtcaatcccaaataga |
9500546 |
T |
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| Q |
103 |
aatgaggagccttctatcccaaaagcataccagataccaggatgacttcaataccaataaccggcttttacttataaactacaagtaatttatatttata |
202 |
Q |
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| T |
9500545 |
aatgaggagccttctatcccaaaagcataccagataccaggatgacttcaataccaataaccggattttacttataa--tacaagtaatttatatttata |
9500448 |
T |
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| Q |
203 |
ttacgttacacacataaatgtt |
224 |
Q |
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| T |
9500447 |
ttacgttatacacataaatgtt |
9500426 |
T |
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