View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13004_high_6 (Length: 359)
Name: NF13004_high_6
Description: NF13004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13004_high_6 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
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|
| [»] chr8 (2 HSPs) |
| |
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| [»] chr6 (2 HSPs) |
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|
| [»] scaffold0703 (1 HSPs) |
| | |
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| [»] scaffold0010 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 10 - 359
Target Start/End: Original strand, 24465591 - 24465940
Alignment:
| Q |
10 |
agcataggcagtggtacttacttaggactcccttccatggtcggacgtagtaagaaatatgtcttaaactatctcaaagaccgtatttggaaaaagtgtc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24465591 |
agcataggcagtggtacttacttaggactcccttccatggtcggacgtagtaagaaatctgtctttaactatctcaaagaccgtatttggaaaaagtgtc |
24465690 |
T |
|
| Q |
110 |
aatcttggagtgctaaatctctgtcgagagcaggtaaagaggtgctcatcaaatctgttgctcaagcaattccttcatattgtatgggagcttttctcat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24465691 |
aatcttggagtgctaaatctctgtcgagagcaggtaaagaggtgctcatcaaatcggttgctcaagcaattccttcatattgtatgggagcttttctcat |
24465790 |
T |
|
| Q |
210 |
tccaacatctttatgtgaagaaattgaaagaaccatgaattctttctattggggttctnnnnnnnntggcagtcggggtataaattggatgagatggaag |
309 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
24465791 |
tccaacctctttatgtgaagaaattgaaagaaccatgaattctttctattggggttctaaaaaagatggcagtaggggtataaattggatgagatggaac |
24465890 |
T |
|
| Q |
310 |
aaattatctcttcacaaaagtcgtggtggactcaaatttagggatatgga |
359 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
24465891 |
aaattatctcttcacaaaagtcatggtggactcggatttagggatatgga |
24465940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 359
Target Start/End: Complemental strand, 4018904 - 4018555
Alignment:
| Q |
10 |
agcataggcagtggtacttacttaggactcccttccatggtcggacgtagtaagaaatatgtcttaaactatctcaaagaccgtatttggaaaaagtgtc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4018904 |
agcataggcagtggtacttacttaggactcccttccatggtcggacgtagtaagaaatctgtctttaactatctcaaagaccgtatttggaaaaagtgtc |
4018805 |
T |
|
| Q |
110 |
aatcttggagtgctaaatctctgtcgagagcaggtaaagaggtgctcatcaaatctgttgctcaagcaattccttcatattgtatgggagcttttctcat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4018804 |
aatcttggagtgctaaatctctgtcgagagcaggtaaagagatgctcatcaaatcggttgctcaagcaattccttcatattgtatgggagcttttctcat |
4018705 |
T |
|
| Q |
210 |
tccaacatctttatgtgaagaaattgaaagaaccatgaattctttctattggggttctnnnnnnnntggcagtcggggtataaattggatgagatggaag |
309 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
4018704 |
tccaacctctttatgtgaagaaattgaaagaaccatgaattctttctattggggttctaaaaaagatggcagtaggggtataaattggatgagatggaac |
4018605 |
T |
|
| Q |
310 |
aaattatctcttcacaaaagtcgtggtggactcaaatttagggatatgga |
359 |
Q |
| |
|
||| |||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
4018604 |
aaactatctcttcacaaaagtcatggtggactcggatttagggatatgga |
4018555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 118 - 359
Target Start/End: Complemental strand, 8072714 - 8072474
Alignment:
| Q |
118 |
agtgctaaatctctgtcgagagcaggtaaagaggtgctcatcaaatctgttgctcaagcaattccttcatattgtatgggagcttttctcattccaacat |
217 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || | |
|
|
| T |
8072714 |
agtgctaaatctctttctagagctggtaaagaggtgctcatcaaatctgttgctcaagcaattccttcttattgtatgggagcttttctcatccccacct |
8072615 |
T |
|
| Q |
218 |
ctttatgtgaagaaattgaaagaaccatgaattctttctattggggttctnnnnnnnntggcagtcggggtataaattggatgagatggaagaaattatc |
317 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| |||||| || |||||||| || |||||||| |||||||||||||||||| | |||||||| |
|
|
| T |
8072614 |
ctttatgtgaag-aatagaaagaaccatgacttctttttactggggttcaaaaaggaacggtagtcggggaataaattggatgagatgggataaattatc |
8072516 |
T |
|
| Q |
318 |
tcttcacaaaagtcgtggtggactcaaatttagggatatgga |
359 |
Q |
| |
|
| || |||| ||||||||| ||| |||| | |||||||| |
|
|
| T |
8072515 |
attgcataaaactcgtggtggtctcggatttcgtgatatgga |
8072474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 10 - 359
Target Start/End: Original strand, 29291203 - 29291552
Alignment:
| Q |
10 |
agcataggcagtggtacttacttaggactcccttccatggtcggacgtagtaagaaatatgtcttaaactatctcaaagaccgtatttggaaaaagtgtc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29291203 |
agcataggcagtggtacttacttaggactcccttccatggtcggacgtagtaagaaatctgtctttaactatctcaaagaccgtatttggaaaaagtgtc |
29291302 |
T |
|
| Q |
110 |
aatcttggagtgctaaatctctgtcgagagcaggtaaagaggtgctcatcaaatctgttgctcaagcaattccttcatattgtatgggagcttttctcat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29291303 |
aatcttggagtgctaaatctctgtcgagagcaggtaaagaggtgctcatcaaatcggttgctcaagcaattccttcatattgtatgggagcttttctcat |
29291402 |
T |
|
| Q |
210 |
tccaacatctttatgtgaagaaattgaaagaaccatgaattctttctattggggttctnnnnnnnntggcagtcggggtataaattggatgagatggaag |
309 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
29291403 |
tccaacctctttatgtgaagaaattgaaagaaccatgaattctttctattggggttctaaaaaagatggcagtaggggtataaattggatgagatggaac |
29291502 |
T |
|
| Q |
310 |
aaattatctcttcacaaaagtcgtggtggactcaaatttagggatatgga |
359 |
Q |
| |
|
||| |||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
29291503 |
aaactatctcttcacaaaagtcatggtggactcggatttagggatatgga |
29291552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 359
Target Start/End: Original strand, 35611902 - 35612251
Alignment:
| Q |
10 |
agcataggcagtggtacttacttaggactcccttccatggtcggacgtagtaagaaatatgtcttaaactatctcaaagaccgtatttggaaaaagtgtc |
109 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35611902 |
agcataggcagtggtgcttacttaggactcccttccatggtcggacgtagtaagaaatctgtctttaactatctcaaagaccgtatttggaaaaagtgtc |
35612001 |
T |
|
| Q |
110 |
aatcttggagtgctaaatctctgtcgagagcaggtaaagaggtgctcatcaaatctgttgctcaagcaattccttcatattgtatgggagcttttctcat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35612002 |
aatcttggagtgctaaatctctgtcgagagcaggtaaagagatgctcatcaaatcggttgctcaagcaattccttcatattgtatgggagcttttctcat |
35612101 |
T |
|
| Q |
210 |
tccaacatctttatgtgaagaaattgaaagaaccatgaattctttctattggggttctnnnnnnnntggcagtcggggtataaattggatgagatggaag |
309 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
35612102 |
tccaacctctttatgtgaagaaattgaaagaaccatgaattctttctattggggttctaaaaaagatggcagtaggggtataaattggatgagatggaac |
35612201 |
T |
|
| Q |
310 |
aaattatctcttcacaaaagtcgtggtggactcaaatttagggatatgga |
359 |
Q |
| |
|
||| |||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
35612202 |
aaactatctcttcacaaaagtcatggtggactcggatttagggatatgga |
35612251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 10 - 359
Target Start/End: Complemental strand, 42199614 - 42199266
Alignment:
| Q |
10 |
agcataggcagtggtacttacttaggactcccttccatggtcggacgtagtaagaaatatgtcttaaactatctcaaagaccgtatttggaaaaagtgtc |
109 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||||||||||||||||| ||||||||| ||| || |||||||||||||||||||| ||||||| ||||| |
|
|
| T |
42199614 |
agcatagggagtgctacttacttaggtctcccttccatggtcggacgaagtaagaaagttgtttttaactatctcaaagaccgtatatggaaaa-gtgtc |
42199516 |
T |
|
| Q |
110 |
aatcttggagtgctaaatctctgtcgagagcaggtaaagaggtgctcatcaaatctgttgctcaagcaattccttcatattgtatgggagcttttctcat |
209 |
Q |
| |
|
|||||||||| | || ||| ||||| |||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| || |
|
|
| T |
42199515 |
aatcttggagcgttaggtctttgtcggaagcaggtaaagaggtgctcatcaaatatgttgcacaagcaattcctttgtattgtatgggagcttttcttat |
42199416 |
T |
|
| Q |
210 |
tccaacatctttatgtgaagaaattgaaagaaccatgaattctttctattggggttctnnnnnnnntggcagtcggggtataaattggatgagatggaag |
309 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||| || ||||||||| |||||| |||||||||||||||| ||||||||| |
|
|
| T |
42199415 |
tcacacctctttatgtgaagaaattgaaagaaccatgaattctttttactggggttctaaaaagaatggcagccggggtataaattggaggagatggaac |
42199316 |
T |
|
| Q |
310 |
aaattatctcttcacaaaagtcgtggtggactcaaatttagggatatgga |
359 |
Q |
| |
|
||| | ||||| || |||| | ||||||||||| |||| ||||||||| |
|
|
| T |
42199315 |
aaactgtctctccataaaaattgtggtggactcgcattttaggatatgga |
42199266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 83 - 359
Target Start/End: Original strand, 21950829 - 21951105
Alignment:
| Q |
83 |
tcaaagaccgtatttggaaaaagtgtcaatcttggagtgctaaatctctgtcgagagcaggtaaagaggtgctcatcaaatctgttgctcaagcaattcc |
182 |
Q |
| |
|
||||||| || || |||||||| || ||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21950829 |
tcaaagatcgaatatggaaaaaatgccaatcctggagtgctaaatctctttctagagctggtaaagaggtgctcatcaaatctgttgctcaagcaattcc |
21950928 |
T |
|
| Q |
183 |
ttcatattgtatgggagcttttctcattccaacatctttatgtgaagaaattgaaagaaccatgaattctttctattggggttctnnnnnnnntggcagt |
282 |
Q |
| |
|
||| |||||||||| |||||||||||| || || ||||||||||||||||| |||||||||||||||||||| || |||||||| || ||| |
|
|
| T |
21950929 |
ttcttattgtatggcagcttttctcatccccacctctttatgtgaagaaatagaaagaaccatgaattctttttactggggttcaaaaaggaacggtagt |
21951028 |
T |
|
| Q |
283 |
cggggtataaattggatgagatggaagaaattatctcttcacaaaagtcgtggtggactcaaatttagggatatgga |
359 |
Q |
| |
|
||||| |||||||||||||||||| | |||||||| | || |||| ||||||||| ||| |||| | |||||||| |
|
|
| T |
21951029 |
cggggaataaattggatgagatgggataaattatcattgcataaaactcgtggtggtctcggatttcgtgatatgga |
21951105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 16861804 - 16861866
Alignment:
| Q |
276 |
tggcagtcggggtataaattggatgagatggaagaaattatctcttcacaaaagtcgtggtgg |
338 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| | || | |||||||||| |||||| |
|
|
| T |
16861804 |
tggccgtcggggtataaattggatgagatgggagaaactcactttgcacaaaagtcttggtgg |
16861866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 29016593 - 29016681
Alignment:
| Q |
139 |
gcaggtaaagaggtgctcatcaaatctgttgctcaagcaattccttcatattgtatgggagcttttctcattccaacatctttatgtga |
227 |
Q |
| |
|
|||||||||||||| || || ||||| ||||| ||||| |||||||||||||||||||| |||||||| || ||| | ||||||||||| |
|
|
| T |
29016593 |
gcaggtaaagaggttcttattaaatcggttgcgcaagctattccttcatattgtatgggtgcttttcttatcccatcctctttatgtga |
29016681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 266
Target Start/End: Complemental strand, 54423110 - 54422929
Alignment:
| Q |
85 |
aaagaccgtatttggaaaaagtgtcaatcttggagtgctaaatctctgtcgagagcaggtaaagaggtgctcatcaaatctgttgctcaagcaattcctt |
184 |
Q |
| |
|
|||||||| || |||||||| ||||| |||||||||||| || || || | ||||| ||||| || | |||||||| || || ||||| || || | |
|
|
| T |
54423110 |
aaagaccgcatctggaaaaactgtcagtcttggagtgctcgctccctatcacgtgcaggaaaagaagtcttgatcaaatccgtggcacaagctataccct |
54423011 |
T |
|
| Q |
185 |
catattgtatgggagcttttctcattccaacatctttatgtgaagaaattgaaagaaccatgaattctttctattggggttc |
266 |
Q |
| |
|
| ||||||||||| ||||| |||||||| || ||||||||||||||||| || || | |||||||| || || |||||||| |
|
|
| T |
54423010 |
cttattgtatgggtgctttcctcattccgacttctttatgtgaagaaatggacaggatgatgaattcattttactggggttc |
54422929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 188
Target Start/End: Original strand, 16426017 - 16426096
Alignment:
| Q |
109 |
caatcttggagtgctaaatctctgtcgagagcaggtaaagaggtgctcatcaaatctgttgctcaagcaattccttcata |
188 |
Q |
| |
|
|||||||||||||| |||||||| || |||||| | ||||| || | || |||||| |||||||||| ||||||||||| |
|
|
| T |
16426017 |
caatcttggagtgcaaaatctctatcaagagcaagaaaagaagttttgattaaatctcttgctcaagctattccttcata |
16426096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 23601713 - 23601649
Alignment:
| Q |
160 |
aaatctgttgctcaagcaattccttcatattgtatgggagcttttctcattccaacatctttatg |
224 |
Q |
| |
|
|||| ||| |||||||| || ||||| ||||||||||| || ||||||||||| || |||||||| |
|
|
| T |
23601713 |
aaatatgtcgctcaagctatcccttcttattgtatgggtgcctttctcattcctacttctttatg |
23601649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 267
Target Start/End: Original strand, 20128016 - 20128189
Alignment:
| Q |
94 |
atttggaaaaagtgtcaatcttggagtgctaaatctctgtcgagagcaggtaaagaggtgctcatcaaatctgttgctcaagcaattccttcatattgta |
193 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||| || | ||||| ||||| || | |||||||| || || ||||| || || || || |||| |
|
|
| T |
20128016 |
atttggaaaaaatgtcaatcttggagtgctcgatctctatcccgtgcaggaaaagaagtcttgatcaaatccgtggcacaagctataccctcttactgta |
20128115 |
T |
|
| Q |
194 |
tgggagcttttctcattccaacatctttatgtgaagaaattgaaagaaccatgaattctttctattggggttct |
267 |
Q |
| |
|
|||| ||||| ||| |||| | || |||||||| ||||| ||||||| ||||| ||||| || ||||||||| |
|
|
| T |
20128116 |
tgggtgctttcctctttcctgcttcattatgtgaggaaatggaaagaaggatgaactctttttactggggttct |
20128189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 50181302 - 50181391
Alignment:
| Q |
178 |
attccttcatattgtatgggagcttttctcattccaacatctttatgtgaagaaattgaaagaaccatgaattctttctattggggttct |
267 |
Q |
| |
|
||||| || |||||||||||||| || |||||||| || ||| | ||||| || |||||||||| ||||| || ||||||||||||||| |
|
|
| T |
50181302 |
attccatcttattgtatgggagccttcctcattcctacgtctctctgtgatgagattgaaagaatgatgaactcattctattggggttct |
50181391 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 4050144 - 4050060
Alignment:
| Q |
113 |
cttggagtgctaaatctctgtcgagagcaggtaaagaggtgctcatcaaatctgttgctcaagcaattccttcatattgtatggg |
197 |
Q |
| |
|
|||||||||| | |||||| || ||||| || |||||||| ||||||||||| ||||| || || ||||| || ||||||||||| |
|
|
| T |
4050144 |
cttggagtgcaagatctctttctagagcgggaaaagaggtactcatcaaatcggttgcccaggccattccctcctattgtatggg |
4050060 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 12460300 - 12460238
Alignment:
| Q |
276 |
tggcagtcggggtataaattggatgagatggaagaaattatctcttcacaaaagtcgtggtgg |
338 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| | || | |||||||||| |||||| |
|
|
| T |
12460300 |
tggccgtcggggtataaattggatgagatgggagaaactcactttgcacaaaagtcttggtgg |
12460238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 257
Target Start/End: Original strand, 6864080 - 6864259
Alignment:
| Q |
78 |
ctatctcaaagaccgtatttggaaaaagtgtcaatcttggagtgctaaatctctgtcgagagcaggtaaagaggtgctcatcaaatctgttgctcaagca |
177 |
Q |
| |
|
|||| ||||||| |||||||||||||| |||||||||||||| |||| ||| | || | | || ||||| | | |||||||| |||| ||||| |
|
|
| T |
6864080 |
ctatgtcaaagatcgtatttggaaaaaatgtcaatcttggagcgctagatccatctcttgtactgggaaagaaatcttgatcaaatcagttgtccaagct |
6864179 |
T |
|
| Q |
178 |
attccttcatattgtatgggagcttttctcattccaacatctttatgtgaagaaattgaaagaaccatgaattctttcta |
257 |
Q |
| |
|
||||| || ||||||||||| | ||||||| | || || || ||||| ||||| |||||||| | |||||||||||||| |
|
|
| T |
6864180 |
attccctcctattgtatgggggattttctcctccccacctccttatgcgaagagattgaaaggatgatgaattctttcta |
6864259 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0703 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 1192 - 1130
Alignment:
| Q |
276 |
tggcagtcggggtataaattggatgagatggaagaaattatctcttcacaaaagtcgtggtgg |
338 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| | || | |||||||||| |||||| |
|
|
| T |
1192 |
tggccgtcggggtataaattggatgagatgggagaaactcactttgcacaaaagtcttggtgg |
1130 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 263
Target Start/End: Complemental strand, 238390 - 238221
Alignment:
| Q |
94 |
atttggaaaaagtgtcaatcttggagtgctaaatctctgtcgagagcaggtaaagaggtgctcatcaaatctgttgctcaagcaattccttcatattgta |
193 |
Q |
| |
|
|||||||| || ||||||||||||||| ||| |||||| || | ||||||||||| || || || |||||| |||| || || || || || ||||||| |
|
|
| T |
238390 |
atttggaagaaatgtcaatcttggagttctagatctctctctcgggcaggtaaagaagttcttattaaatctattgcacatgctatcccctcttattgta |
238291 |
T |
|
| Q |
194 |
tgggagcttttctcattccaacatctttatgtgaagaaattgaaagaaccatgaattctttctattgggg |
263 |
Q |
| |
|
|||| || ||| | ||||| || || | ||||||||||| || || | ||||| || ||||||||||| |
|
|
| T |
238290 |
tgggggcatttttgattcctacttccctttgtgaagaaatcgagaggatgatgaactccttctattgggg |
238221 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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