View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13004_high_8 (Length: 345)
Name: NF13004_high_8
Description: NF13004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13004_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 31316748 - 31317082
Alignment:
| Q |
1 |
cgttcgaccaatcttttgcttgtccacttaatgagtaaacgagcaatcaaagatgtttgtcggattgtaatgctccttgtggacatacagtgcctcaagt |
100 |
Q |
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| T |
31316748 |
cgttcgaccaatcttttgcttgtccgcttaatgagtaaacgagcaatcaaagatgtatgtcggattgtgatgctccttgtggacatatagtgcctcaagt |
31316847 |
T |
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| Q |
101 |
ttcaaaaaa--tatgtcagatgctctatgcaatcttttgagttcttcccttataattggttttccttcagagatttgaggatgtgatttttaatgttgaa |
198 |
Q |
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| T |
31316848 |
ttaaaaaaaaatatgtcagatgctctatgcaatcttttgagttcttcccggataattggttttccttcagagatttgaggatgtgatttttaatgttgaa |
31316947 |
T |
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| Q |
199 |
tgttttttgggttcatcggttggaatccaaaggcctcatcgtccaagttgtcgtgctgaatatctctcatctcatattcgtcagaagaaaaaccactatc |
298 |
Q |
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| T |
31316948 |
tgtttt-tgggttcatcggttggaatccaaaggcctcatcgtccaagttgtcgtgctgaatatctctcatctcatattcgtcagaagaaaaaccactatc |
31317046 |
T |
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| Q |
299 |
gtct--gagtgggataattgttgctctggtggcttc |
332 |
Q |
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| T |
31317047 |
gtctgagagtgggataattgttgctctggtggcttc |
31317082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 13218254 - 13218323
Alignment:
| Q |
131 |
tcttttgagttcttcccttataattggttttccttcagagatttgaggatgtgatttttaatgttgaatg |
200 |
Q |
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| T |
13218254 |
tcttttgagttattctcggagaattgattgtccttcagaaatttgaggacgtgaattttaatgttgaatg |
13218323 |
T |
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