View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13004_low_1 (Length: 379)
Name: NF13004_low_1
Description: NF13004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13004_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 371
Target Start/End: Original strand, 43603817 - 43604171
Alignment:
| Q |
17 |
aacactaaccaataatgatggaggaattttatatggtggatgcactgatggttacatacactattggttaaagggttggtttgcaggacaactgcaatat |
116 |
Q |
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| T |
43603817 |
aacactaaccaataatgatggaggaattttatatggtggatgcactgatggttacatacactattggttaaagggttggtttgcaggacaactgcaatat |
43603916 |
T |
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| Q |
117 |
ggtggatcaattcaaggacacacacatgcagtattgtgcttagctagtgttgctaaatatgtagttagtggttcggctgattcaactagcagggtttgga |
216 |
Q |
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| T |
43603917 |
ggtggatcaattcaaggacacacacatgcagtattgtgcttagctagtgttgctaaatatgtagttagtggttcggctgattcaactagcagggtttgga |
43604016 |
T |
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| Q |
217 |
gtagagaacgtgatggacaacatgtttgtttagctgttttggctggtcatagaggaccaattaggtgtgtaacagcttttttaggaggatgcttggttaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||| |
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| T |
43604017 |
gtagagaacgtgatggacaacatgtttgtttagctgttttggctggtcatagaggaccaattagatctgtaacagcttttttaggaggatgtttggttaa |
43604116 |
T |
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| Q |
317 |
ggaagatgataatgaagattcttgtactgtttgtactggaagccttgatgatgtc |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43604117 |
ggaagatgataatgaagattcttgtactgtttgtactggaagccttgatggtgtc |
43604171 |
T |
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