View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13004_low_2 (Length: 314)
Name: NF13004_low_2
Description: NF13004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13004_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 1329229 - 1329526
Alignment:
| Q |
1 |
aatgctcgcaattgcaagtctgtggaacttcaaaagaaaccagtaatttagaatctgctgcatgataaagtggcagtgaactcaattgtaatatttttgt |
100 |
Q |
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| T |
1329229 |
aatgctcgcaattgcaagtctgtggaacttcaaaagaaaccagtaatttagaatctgctgcatgataaagtggcagtgaactcaattgtaatatttttgt |
1329328 |
T |
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| Q |
101 |
tatgcttttgatattaatctcttgtttctggttttgcgccatgccacattgtcctgattcagctgtcaaggtttagacactgctctcgagtttgtatgat |
200 |
Q |
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| T |
1329329 |
tatgcttttgatattaatctcttgtttctggttttgtgccatgccacattgtcctgattcagctgtcaaggtttagacactgctctcgagtttgtatgat |
1329428 |
T |
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| Q |
201 |
tttgatcaacaagcaagcagtcagtgttctttgatttttctcaatatgttttgatttaaagatactagcaatttagaaaatgtccagttccttgtttt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1329429 |
tttgatcaacaagcaagcagtcagtgttctttgatttttctcaatatgttttgatttaaagatactagcaatttagaaaatgtccagttccttgtttt |
1329526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 174
Target Start/End: Original strand, 44188073 - 44188188
Alignment:
| Q |
59 |
tgcatgataaagtggcagtgaactcaattgtaatatttttgttatgcttttgatattaatctcttgtttctggttttgcgccatgccacattgtcctgat |
158 |
Q |
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||||||||||| ||||||||||||| ||| ||||||||||| ||||||||| | |||||||||||||||||||||| || ||| |||| |||||| | |
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| T |
44188073 |
tgcatgataaaagggcagtgaactcagctgtgatatttttgttctgcttttgacactaatctcttgtttctggttttgtaccttgcaacatcgtcctggt |
44188172 |
T |
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| Q |
159 |
tcagctgtcaaggttt |
174 |
Q |
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||||| |||||||||| |
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| T |
44188173 |
tcagccgtcaaggttt |
44188188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 298
Target Start/End: Original strand, 44188209 - 44188291
Alignment:
| Q |
216 |
agcagtcagtgttctttgatttttctcaatatgttttgatttaaagatactagcaatttagaaaatgtccagttccttgtttt |
298 |
Q |
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|||||||| |||||||| ||||||||| || |||||||||||||||| | ||||| |||| |||||| |||||||||||||| |
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| T |
44188209 |
agcagtcaatgttctttaatttttctccatgtgttttgatttaaagaaattagcagtttaaaaaatgctcagttccttgtttt |
44188291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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