View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13005_high_10 (Length: 325)

Name: NF13005_high_10
Description: NF13005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13005_high_10
NF13005_high_10
[»] chr8 (3 HSPs)
chr8 (1-318)||(1522190-1522507)
chr8 (4-317)||(1512627-1512940)
chr8 (1-269)||(1517827-1518095)
[»] chr1 (1 HSPs)
chr1 (1-271)||(16643498-16643768)


Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 1522190 - 1522507
Alignment:
Q  1 tcagccaccttggcagtgatgctcctacaacaattggcatggacagtggttacagccctaaaatctttactatcttggcaaaatccactaaaatagaggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1522190 tcagccaccttggcagtgatgctcctacaacaattggcatggacagtggttacagccctaaaatctttactatcttggcaaaatccactaaaatagaggg 1522289  T
Q  101 tatccaagaaccttgccttgattcccaaatctcgaaatataccacctttaatgaggtcctcaagcacatcttgctccnnnnnnnctgtgaaattatcttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  1522290 tatccaagaaccttgccttgattcccaaatctcgaaatataccacctttaatgaggtcctcaagcacatcttgctcctttttttctgtgaaattatcttt 1522389  T
Q  201 cattccataccatgtctcaaacaaagatatggtcttgttgtttgatctcacaaagaaaaatccagtattgactcgannnnnnnctgaccaaggatcacca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  1522390 cattccataccatgtctcaaacaaagatatggtcttgttgtttgatctcacaaagaaaaatccagtattgactcgatttttttctgaccaaggatcacca 1522489  T
Q  301 aagtattcgtctgtgctg 318  Q
    ||||||||||||||||||    
T  1522490 aagtattcgtctgtgctg 1522507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 317
Target Start/End: Original strand, 1512627 - 1512940
Alignment:
Q  4 gccaccttggcagtgatgctcctacaacaattggcatggacagtggttacagccctaaaatctttactatcttggcaaaatccactaaaatagagggtat 103  Q
    |||||||| ||||||||||| | |||||| |||||||| |   | ||||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||    
T  1512627 gccaccttcgcagtgatgcttcgacaacagttggcatgaatgatcgttactgccctaacatctttactgtcttggcaaaatccactaaaataaagggtat 1512726  T
Q  104 ccaagaaccttgccttgattcccaaatctcgaaatataccacctttaatgaggtcctcaagcacatcttgctccnnnnnnnctgtgaaattatctttcat 203  Q
    ||||||| ||  ||||||  || |||| || |||||||||| ||| |||||||||   ||||||||||||||||       ||||| |||| |||||| |    
T  1512727 ccaagaatctaaccttgagccctaaatgtccaaatataccagcttcaatgaggtcaataagcacatcttgctcctttttacctgtggaattgtctttctt 1512826  T
Q  204 tccataccatgtctcaaacaaagatatggtcttgttgtttgatctcacaaagaaaaatccagtattgactcgannnnnnnctgaccaaggatcaccaaag 303  Q
    |||||||||||| |||||||| ||||||||||| || ||||| |||||||||||||||||||||||||    |       |||||||||||||||||| |    
T  1512827 tccataccatgtttcaaacaaggatatggtctttttatttgacctcacaaagaaaaatccagtattgatcaaatgtttttctgaccaaggatcaccaagg 1512926  T
Q  304 tattcgtctgtgct 317  Q
    ||| ||||||||||    
T  1512927 tatacgtctgtgct 1512940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 1517827 - 1518095
Alignment:
Q  1 tcagccaccttggcagtgatgctcctacaacaattggcatggacagtggttacagccctaaaatctttactatcttggcaaaatccactaaaatagaggg 100  Q
    ||||||||||| ||||  ||||| | ||||||||||||||| |||||||| ||  ||||||| |||||||||||||| |||||||||||||||||||| |    
T  1517827 tcagccacctttgcagctatgcttcgacaacaattggcatgaacagtggtcacttccctaaagtctttactatcttgacaaaatccactaaaatagagag 1517926  T
Q  101 tatccaagaaccttgccttgattcccaaatctcgaaatataccacctttaatgaggtcctcaagcacatcttgctccnnnnnnnctgtgaaattatcttt 200  Q
    |||||||||||||  | || | |||||||| || || ||||||||||  |||||||||   ||||||||||||||||       ||||| ||||||||||    
T  1517927 tatccaagaacctaacatttagtcccaaatgtccaattataccacctccaatgaggtcaagaagcacatcttgctccttttttcctgtggaattatcttt 1518026  T
Q  201 cattccataccatgtctcaaacaaagatatggtcttgttgtttgatctcacaaagaaaaatccagtatt 269  Q
    |||||||| |||| | ||||||||||||||||||||||| || || ||| ||||| |||||||||||||    
T  1518027 cattccattccatatttcaaacaaagatatggtcttgttattcgacctcgcaaagtaaaatccagtatt 1518095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 16643498 - 16643768
Alignment:
Q  1 tcagccaccttggcagtgatgctcctacaacaattggcatggacagtggttacagccctaaaatctttactatcttggcaaaatccactaaaatagaggg 100  Q
    ||||||||||| |||||||| || | ||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||| |||||||||||||| |    
T  16643498 tcagccacctttgcagtgatacttcgacaacaattggcatgaacagtggtcactgccctaaaatctttactatcttgacaaaaaccactaaaatagagag 16643597  T
Q  101 tatccaagaaccttgccttgattcccaaatctcgaaatataccacctttaatgaggtcctcaagcacatcttgctccnnnnnnnctgtgaaattatcttt 200  Q
    |||||||||||||  |||||| |||||| | || || |||||||  | ||||||||||   ||| |||||||||||        ||||| |||| |||||    
T  16643598 tatccaagaacctaaccttgagtcccaagtgtccaattataccatgtctaatgaggtcaagaagaacatcttgctctttttttcctgtggaattgtcttt 16643697  T
Q  201 cattccataccatgtctcaaacaaagatatggtcttgttgtttgatctcacaaagaaaaatccagtattga 271  Q
    | ||||||||||||| ||||||||||||||||||||||| || || || |||||| ||||||| |||||||    
T  16643698 ctttccataccatgtttcaaacaaagatatggtcttgttattggaccttacaaagtaaaatccggtattga 16643768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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