View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13005_high_3 (Length: 554)
Name: NF13005_high_3
Description: NF13005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13005_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 65 - 541
Target Start/End: Complemental strand, 24175796 - 24175320
Alignment:
| Q |
65 |
gtggtattacatagaatatgcaaaaactataccatgattctggcatatctgccgtgataacaaaatgcattttaaattgtaagaaataagaataaatcaa |
164 |
Q |
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| T |
24175796 |
gtggtattacatagaatatgcaaaaactacaccatgattctggcatatctgccgtgataacaaaatgcatttcaaattgtaagaaataagaataaatcaa |
24175697 |
T |
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| Q |
165 |
tctcttaaaatggaaaattgcattaatcatataaaataaacgatatacaagttccaaattaactcatctttcactacaaccattgatttcatttgatttg |
264 |
Q |
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| T |
24175696 |
tctcttaaaatggaaaattgcattaatcatataaaataaacgatatacaagttccaaattaactcatctttcactacaaccattgatttcatttgatttg |
24175597 |
T |
|
| Q |
265 |
attacaaggttggtacaataataacctgaaaatttggagtagcagtttgagaagaagataaagacaaagaatctttatttctctgagaagagcttctcca |
364 |
Q |
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| T |
24175596 |
attacaaggttggtacaataataacctgaaaatttggagtagcagtttgagaagaagataaagacaaagaatctttattcctctgagaagagcttctcca |
24175497 |
T |
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| Q |
365 |
aaacccagtttcataaaacgtattccacatctccttctctaattccacaacannnnnnnnnnnnnnnnnnnnnngcacccccaaactatcacttttcaca |
464 |
Q |
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| T |
24175496 |
aaacccagtttcataaaacgtattccacatctccttctccaattccacaacatctttatcttcttcttcttcttgcacccccaaactatcacttttcaca |
24175397 |
T |
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| Q |
465 |
cccctatatgtttcatcatcatcactacacgttggatgaacacgggccccaacaatatcatcacagcaaccacaggt |
541 |
Q |
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| T |
24175396 |
cccctatatgtttcatcatcatcactacacgttggatgaacacgggccccaacaatatcatcacagcaaccacaggt |
24175320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 24175878 - 24175839
Alignment:
| Q |
18 |
catattgtagtaaacaagacctctaaatgtttaaatttcg |
57 |
Q |
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| T |
24175878 |
catattgtagtaaacaagacctctaaatgtttaaatttcg |
24175839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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