View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13005_high_8 (Length: 400)
Name: NF13005_high_8
Description: NF13005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13005_high_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 46 - 381
Target Start/End: Complemental strand, 428554 - 428215
Alignment:
| Q |
46 |
tttcttaattccctataggtttcaattgtttgagtttgatttaattgcaatgacttacatctgtttgcagaaggtgaagttgaagaggactgcatgaagc |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
428554 |
tttcttaattccctataggtttcaattgtttgagtttgatttaattgcaatgacttacatctgtttgcagaaggtaaagttgaagaggattgcatgaagc |
428455 |
T |
|
| Q |
146 |
ataccactatgccactatcaacaatgttgtcctgcatgctatttggatcttatgcacgttacttctaagtgg----tatgaaactatgctatttttggct |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
428454 |
ataccactatgccactatcaacaatgttgtcctgcatgctgtttggatcttatgcatgttacttctaagtggtatatatgaaactatgctatttttggct |
428355 |
T |
|
| Q |
242 |
actaggtgttatgactaattgacactaattgagattgaaaacaaaaaattctttagcaacgttcctcttaattttcttctattgcttcaacccctttcgt |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
428354 |
actaggtgttatgactaattgacactaattgagattgaaaacaaacaattctttagcaacgttcctcttaattttcttctattgcttcaacccctttcgt |
428255 |
T |
|
| Q |
342 |
tggccggtgtccctttgagcttgtattgtgtgatgccatg |
381 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
428254 |
tggtcggtgtccctttgagcttgtattgtgtgatgccatg |
428215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University