View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13005_low_1 (Length: 764)
Name: NF13005_low_1
Description: NF13005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13005_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 434
Target Start/End: Complemental strand, 49876947 - 49876516
Alignment:
| Q |
19 |
ggtaatactacgacgacaactgcgtagaaatccgtcaccgtttccggagccttttaatcggaaatattcacccgatctgttttcatc------------- |
105 |
Q |
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| T |
49876947 |
ggtaatactacgacgacaactgcgtagaaatccgtcaccgtttccggagccttttaatcggaaatattcacccgatctgttttcatcatcttcttcttct |
49876848 |
T |
|
| Q |
106 |
-----ttcttcatcgtcttcgggttccgatgacatggacgacaacgagcaggtttcatcttcactgtcgctgaaatcatcttgagcaatgagaggaggaa |
200 |
Q |
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| T |
49876847 |
tcttcttcttcattgtcttcgggttccgatgacatggatgacaacgagcaggtttcatcttcactgtcgccgaaatcatcttcagcaatgagaggaggaa |
49876748 |
T |
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| Q |
201 |
gagaaggagnnnnnnnggggaatttaatgatgaaaatggtgcgaaaggtggcgagtagagcgaggaaaagagcggaatatttgcagagattgagagctat |
300 |
Q |
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| T |
49876747 |
gagaaggagtttttttggggaatttgatgatgaaaatggtgtgaaaggtggcgagtagagcgaggaaaagagcggaatatttgcagagattgagagctat |
49876648 |
T |
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| Q |
301 |
tgaagaaggatgattctgaaggaaattgaagagatggttgattttgtgagtcacaggaacttgcacttgcatcatttttagaagaacaatggaatggaat |
400 |
Q |
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| T |
49876647 |
tgaagaaggatgattctgaaggaaattgaagagatggttgattttgtgagtcacaggaacttgcacttgcatcatttttagaagaacaatggaatggaaa |
49876548 |
T |
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| Q |
401 |
ggaaaggaaaataataataatggtgatgatgatg |
434 |
Q |
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| T |
49876547 |
ggaaa--ataataataataatggtgatgatgatg |
49876516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 450 - 758
Target Start/End: Complemental strand, 49876479 - 49876170
Alignment:
| Q |
450 |
ctacttaacttactcttgttttttagaatgataacttaacttacttgctggcaatttgttggattatgtagttagcgataactaacataataaactatat |
549 |
Q |
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| T |
49876479 |
ctacttaacttactcttgttttttagaatgataacttaacttacttgctggcaatttgttggattatgtagttagcgataactaacataataaactatat |
49876380 |
T |
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| Q |
550 |
atggtg-aagaatattagtttccacgtaaggaaatgtgttggttaatgataacttataacttccttgttggcaagttgttggattatgtatttagtttgt |
648 |
Q |
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| T |
49876379 |
atggtggaagaatattagtttccacgtaaggaaatgtgttggttaatgataacttataacttccttgttggcaagttgttggattatgtatttagtttgt |
49876280 |
T |
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| Q |
649 |
ataaatcaacatacatggatgtggatatgaatgatgacggaagtcccaaacattattagattagtagagattttcatttgttcaaattttgaactttcct |
748 |
Q |
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| T |
49876279 |
ataaatcaacatacatggatgtggatatgaatgatgacggaagtcccaaacattattagattagtagagattttcatttgttcaaattttgaactttcct |
49876180 |
T |
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| Q |
749 |
tctgtgctcc |
758 |
Q |
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| T |
49876179 |
tctgtgctcc |
49876170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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