View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13005_low_11 (Length: 275)
Name: NF13005_low_11
Description: NF13005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13005_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 19172004 - 19172244
Alignment:
| Q |
13 |
aatatcaacaagaacacttctccttaacctatttgcataaagaacaacactaacaaactcttctatgtaaaccctaacatcatttcccaaaacagctttc |
112 |
Q |
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| T |
19172004 |
aatatcaacaagaacacttctccttaacctatttgcataaagaacaacactaacaaactcttctatgtaaaccctaacatcatttcccaaaacaactttc |
19172103 |
T |
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| Q |
113 |
cctttattatcaccgcgatctttacacgaaaaccagtcaccaacaacgtgttcaacgaaacagccttccgcgcgtgtaagcctatcgttaagtgttggaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
19172104 |
cctttattatcaccgcgatctttacacgaaaaccagtcaccaacaacgtttttaatgaaacagccttccgcgcgtgtaagcctatcgttaagcgttggaa |
19172203 |
T |
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| Q |
213 |
cgatggacttcaaaccgcactctatttgttccatacgtgtt |
253 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |
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| T |
19172204 |
cgatggacttcaaaccgcactctatttgctccatacgtgtt |
19172244 |
T |
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