View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13005_low_12 (Length: 247)

Name: NF13005_low_12
Description: NF13005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13005_low_12
NF13005_low_12
[»] chr6 (20 HSPs)
chr6 (1-244)||(5691537-5691780)
chr6 (3-230)||(5068502-5068729)
chr6 (3-232)||(5348720-5348949)
chr6 (7-232)||(5094386-5094611)
chr6 (3-232)||(5368805-5369034)
chr6 (3-232)||(5424098-5424327)
chr6 (7-232)||(5104304-5104529)
chr6 (7-232)||(5158933-5159158)
chr6 (17-232)||(5183394-5183609)
chr6 (17-232)||(5395388-5395603)
chr6 (3-232)||(5075159-5075388)
chr6 (4-233)||(5148388-5148617)
chr6 (4-99)||(5342172-5342267)
chr6 (23-232)||(5133353-5133562)
chr6 (5-93)||(5356046-5356134)
chr6 (22-233)||(5381993-5382204)
chr6 (3-226)||(5175217-5175440)
chr6 (3-225)||(5277045-5277267)
chr6 (3-137)||(5431847-5431981)
chr6 (3-242)||(5445415-5445651)
[»] chr4 (15 HSPs)
chr4 (4-232)||(4322531-4322759)
chr4 (3-146)||(4333983-4334126)
chr4 (3-224)||(4125868-4126086)
chr4 (3-99)||(4343419-4343515)
chr4 (4-229)||(25568340-25568567)
chr4 (3-242)||(4358745-4358984)
chr4 (3-93)||(4135210-4135300)
chr4 (3-93)||(4351713-4351803)
chr4 (4-83)||(6814246-6814325)
chr4 (17-82)||(6589466-6589531)
chr4 (21-80)||(6771681-6771740)
chr4 (5-83)||(6674477-6674555)
chr4 (4-66)||(6751336-6751398)
chr4 (5-83)||(6794916-6794994)
chr4 (5-62)||(6649548-6649605)
[»] chr5 (1 HSPs)
chr5 (3-245)||(8876133-8876375)
[»] chr7 (2 HSPs)
chr7 (3-232)||(36215320-36215549)
chr7 (17-93)||(34727176-34727252)
[»] scaffold0294 (1 HSPs)
scaffold0294 (3-91)||(10096-10184)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 5691537 - 5691780
Alignment:
Q  1 acaacatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5691537 acaacatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaact 5691636  T
Q  101 nnnnnngtacttgatgattaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaa 200  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5691637 ttttttgtacttgatgattaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaa 5691736  T
Q  201 agctagtggcaatcccccagaatactcaactatattcttggaca 244  Q
    |||||||||||||||||||||||||||||||| ||| |||||||    
T  5691737 agctagtggcaatcccccagaatactcaactacatttttggaca 5691780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 5068502 - 5068729
Alignment:
Q  3 aacatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnn 102  Q
    ||||||||||||  |||||||||||||||||||||| | ||||||||||||||||||||| |||| |||| ||||| ||||||||||||||||||||       
T  5068502 aacatcatttcggtccatcccaataaagaaacaagctatgtcaaggaatatttctttctcagtatcatcatttaaagcatcatagcttattcttaacttc 5068601  T
Q  103 nnnngtacttgatgattaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaaag 202  Q
        ||||||||| ||||||||||  ||||||||||| |||||| || | |||||||||||||   || ||||| |||| ||||||||||||||||||||    
T  5068602 tcctgtacttgattattaggaattcttttgagtttgtccaatacacttttccattctgttacctctctatcaaacaaatatgacccaaggacttccaaag 5068701  T
Q  203 ctagtggcaatcccccagaatactcaac 230  Q
    ||||||||||||||||||||||||||||    
T  5068702 ctagtggcaatcccccagaatactcaac 5068729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 3 - 232
Target Start/End: Complemental strand, 5348949 - 5348720
Alignment:
Q  3 aacatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnn 102  Q
    ||||||||||||  |||||||||||||||||||||| | ||||||||||||||||||||| |||| |||| | ||| |||| |||||||||||||||       
T  5348949 aacatcatttcggtccatcccaataaagaaacaagctatgtcaaggaatatttctttctcagtatcatcattcaaagcatcgtagcttattcttaacttt 5348850  T
Q  103 nnnngtacttgatgattaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaaag 202  Q
        ||||||||| ||||||||||  ||||||||||| |||||| || | |||||||||||||   || ||||| ||   ||||||||||||||||||||    
T  5348849 tcctgtacttgattattaggaattcttttgagtttgtccaatacacttttccattctgttacccctctatcaaacaataatgacccaaggacttccaaag 5348750  T
Q  203 ctagtggcaatcccccagaatactcaacta 232  Q
    ||||||||||||| ||||||||||||||||    
T  5348749 ctagtggcaatcctccagaatactcaacta 5348720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 5094611 - 5094386
Alignment:
Q  7 tcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnnnnnn 106  Q
    ||||||||  |||||||||||||||||||||| || ||||||||||||||||||||  | | |||| ||||| ||||||||||||||||||||           
T  5094611 tcatttcggtccatcccaataaagaaacaagctacatcaaggaatatttctttctcaatgtcatcatttaaagcatcatagcttattcttaacttcttct 5094512  T
Q  107 gtacttgatgattaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaaagctag 206  Q
    ||| ||||| ||||||||||  ||||||||||| |||| | || | |||||||||||||  ||| || ||||||| |||||||||||||||||| |||||    
T  5094511 gtaattgattattaggaattcttttgagtttgtccaatgcacttttccattctgttacctccctatcgaataaatatgacccaaggacttccaatgctag 5094412  T
Q  207 tggcaatcccccagaatactcaacta 232  Q
    |||||| |||||||||||||||||||    
T  5094411 tggcaaccccccagaatactcaacta 5094386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 3 - 232
Target Start/End: Complemental strand, 5369034 - 5368805
Alignment:
Q  3 aacatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnn 102  Q
    ||||||||||||  || ||||||||||||||||||| || ||||||||||||||||||||   || |||| ||||| ||||||||||||||||||||       
T  5369034 aacatcatttcggtccttcccaataaagaaacaagctacatcaaggaatatttctttctcataatcatcatttaaagcatcatagcttattcttaacttc 5368935  T
Q  103 nnnngtacttgatgattaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaaag 202  Q
        ||||||||| ||||||||||  ||||||||||| |||| | || | ||||||||||| |   |||||||| |||| ||||||||  ||||||||||    
T  5368934 ttctgtacttgattattaggaattcttttgagtttgtccaatgcacttttccattctgttatccctctgtcaaacaaatatgacccaataacttccaaag 5368835  T
Q  203 ctagtggcaatcccccagaatactcaacta 232  Q
    ||||||||||||||||||||||||| ||||    
T  5368834 ctagtggcaatcccccagaatactccacta 5368805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 232
Target Start/End: Complemental strand, 5424327 - 5424098
Alignment:
Q  3 aacatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnn 102  Q
    |||||||||||   |||| ||||||||||||||||| | ||||||||||||||||||||| |||| |||| ||||| ||||||||||||||||||||       
T  5424327 aacatcatttctgtccattccaataaagaaacaagctatgtcaaggaatatttctttctcagtatcatcatttaaagcatcatagcttattcttaacttc 5424228  T
Q  103 nnnngtacttgatgattaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaaag 202  Q
        ||||||||| ||||||||||  ||||||||| | |||| | || | ||||||||| | |   ||||| || |||| ||||||||||||||||||||    
T  5424227 tcctgtacttgattattaggaattcttttgagtttttccaatgcacttttccattctgtaatccctctgtcgaacaaatatgacccaaggacttccaaag 5424128  T
Q  203 ctagtggcaatcccccagaatactcaacta 232  Q
    ||||||||||||| |||||||| |||||||    
T  5424127 ctagtggcaatccaccagaataatcaacta 5424098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 5104304 - 5104529
Alignment:
Q  7 tcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnnnnnn 106  Q
    ||||||||  |||||||||||||||||||||| || || |||||||||||||||||  | | |||| |||||||||| |||||||||||||||           
T  5104304 tcatttcggtccatcccaataaagaaacaagctacatcgaggaatatttctttctcaatgtcatcatttaaaccatcgtagcttattcttaacttctttt 5104403  T
Q  107 gtacttgatgattaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaaagctag 206  Q
    ||||||||| ||||||||||  ||||||||||| ||||   || | ||||||| ||||    || || ||||||| |||||||||||||||||| |||||    
T  5104404 gtacttgattattaggaattcttttgagtttgtccaatgtacttttccattctcttacttctctatcgaataaatatgacccaaggacttccaatgctag 5104503  T
Q  207 tggcaatcccccagaatactcaacta 232  Q
    |||||| |||||||||||||||||||    
T  5104504 tggcaaccccccagaatactcaacta 5104529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 5158933 - 5159158
Alignment:
Q  7 tcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnnnnnn 106  Q
    ||||||||  ||||||| |||||||||||||| || ||||||||||||||||||||    | |||| ||||| |||| |||||||||| ||||           
T  5158933 tcatttcggtccatccctataaagaaacaagctacatcaaggaatatttctttctcaaagtcatcatttaaagcatcgtagcttattcgtaacttcttat 5159032  T
Q  107 gtacttgatgattaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaaagctag 206  Q
    ||||||||| ||||||||||  ||||||||||| |||  | || | |||||||||||||  ||| |  |||||||||||||| ||||||||||| |||||    
T  5159033 gtacttgattattaggaattcttttgagtttgtccaacgcacttttccattctgttacctccctattgaataaatgtgaccctaggacttccaatgctag 5159132  T
Q  207 tggcaatcccccagaatactcaacta 232  Q
    |||||| ||||||||||||| |||||    
T  5159133 tggcaaccccccagaatacttaacta 5159158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 5183394 - 5183609
Alignment:
Q  17 ccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnnnnnngtacttgatg 116  Q
    |||||||||||||||||||||| | ||||||||||||||||||||| || | |||||||| | |||| ||||||||| |||||       |||||||||     
T  5183394 ccatcccaataaagaaacaagctatgtcaaggaatatttctttctcggtgtcatcacttagagcatcgtagcttatttttaacttcttttgtacttgatc 5183493  T
Q  117 attaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaaagctagtggcaatccc 216  Q
    ||||||||||  ||||||||| |  ||| | | || |||||||  || |  | | ||||| |||| ||| ||||||||||||| ||||||||||||||||    
T  5183494 attaggaattcttttgagtttttctaatgcacacttccattcttctatccccatatcaaacaaatatgatccaaggacttccagagctagtggcaatccc 5183593  T
Q  217 ccagaatactcaacta 232  Q
    ||||||||||||||||    
T  5183594 ccagaatactcaacta 5183609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 5395603 - 5395388
Alignment:
Q  17 ccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnnnnnngtacttgatg 116  Q
    ||||||||||||| |||||||| | ||||||||||||||||||||| || | |||| ||||| |||||||||||||| |||||       | |||||||     
T  5395603 ccatcccaataaaaaaacaagctatgtcaaggaatatttctttctcagtgtcatcatttaaagcatcatagcttatttttaacttcttttgaacttgatc 5395504  T
Q  117 attaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaaagctagtggcaatccc 216  Q
    ||||||||||  ||||| ||| |  ||||| | || ||| |||| ||    |   ||||| |||||||| ||||||||||||| ||||||||||||||||    
T  5395503 attaggaattcttttgattttttctaatacacacttccactctgctaatcccaattcaaacaaatgtgatccaaggacttccagagctagtggcaatccc 5395404  T
Q  217 ccagaatactcaacta 232  Q
    ||||||||||||||||    
T  5395403 ccagaatactcaacta 5395388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 5075159 - 5075388
Alignment:
Q  3 aacatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnn 102  Q
    ||||||||||||| |||||||||||||||||||||| | ||| ||||||||||  ||||| || | |||  |||||||||||||||||||| |||||       
T  5075159 aacatcatttcgatccatcccaataaagaaacaagctatgtcgaggaatattttcttctcagtgtcatcgtttaaaccatcatagcttatttttaacttc 5075258  T
Q  103 nnnngtacttgatgattaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaaag 202  Q
        | ||||||| ||||||||||  | ||||||| | |||||| | || ||| |||| || |  ||| ||||| |||| |||||||| |||||  | ||    
T  5075259 ttctgcacttgatcattaggaattcttatgagtttctccaatacacacttccactctgctatccccctatcaaacaaatatgacccaatgacttgtagag 5075358  T
Q  203 ctagtggcaatcccccagaatactcaacta 232  Q
    |||| |||||||||||||||||||| ||||    
T  5075359 ctagcggcaatcccccagaatactccacta 5075388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 5148388 - 5148617
Alignment:
Q  4 acatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnnn 103  Q
    |||||||||||  |||||||||||||||||||||| | ||||||||||||||||||| |   |  |||| ||||| | |||||||||||| |||||        
T  5148388 acatcatttcggtccatcccaataaagaaacaagctatgtcaaggaatatttctttcacaagaacatcatttaaatcgtcatagcttatttttaacttct 5148487  T
Q  104 nnngtacttgatgattaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaaagc 203  Q
       | ||||||| ||| ||||||  ||||||||||| |||||| | || ||| ||| ||| |  ||| ||||||||||  |||||||  ||||||| |||    
T  5148488 tctgcacttgatcattgggaattcttttgagtttgtccaatacacacttccactctattatccccctatcaaataaatacgacccaataacttccagagc 5148587  T
Q  204 tagtggcaatcccccagaatactcaactat 233  Q
    ||| |||| || |||  |||||||||||||    
T  5148588 tagcggcagtcgccccaaatactcaactat 5148617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 5342267 - 5342172
Alignment:
Q  4 acatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaac 99  Q
    |||||||||||  |||||||||||||||||||||| | |||||| |||||||||||||| || |  ||| |||||||||||||||||||| |||||    
T  5342267 acatcatttcggtccatcccaataaagaaacaagctatgtcaagaaatatttctttctcagtctcgtcatttaaaccatcatagcttatttttaac 5342172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 5133353 - 5133562
Alignment:
Q  23 caataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnnnnnngtacttgatgattagg 122  Q
    ||||||| |||||||| | || ||||||||||||||||||  |||  ||| ||||| |||||||||||||| ||| |       ||||||||| ||||||    
T  5133353 caataaaaaaacaagctatgttaaggaatatttctttctcaatatcttcatttaaagcatcatagcttatttttagcttcttttgtacttgattattagg 5133452  T
Q  123 aattgctttgagtttgttcaatacgctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaaagctagtggcaatcccccagaa 222  Q
    ||||  | ||||||| | |||||| |  | ||| ||  ||||  |||| || |  |||| ||||||||||||||| | |||||| |||||||||||||||    
T  5133453 aattcttctgagtttctccaatacacattgccactcgattacactcctatctagcaaatatgacccaaggacttctagagctagaggcaatcccccagaa 5133552  T
Q  223 tactcaacta 232  Q
    ||||||||||    
T  5133553 tactcaacta 5133562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 5356046 - 5356134
Alignment:
Q  5 catcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttatt 93  Q
    ||||||||||  | |||||||||||||||||||| | |||||| |||||||||||||| | || |||| ||||||||||||||||||||    
T  5356046 catcatttcggtcgatcccaataaagaaacaagctatgtcaagaaatatttctttctcggcatcatcatttaaaccatcatagcttatt 5356134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 233
Target Start/End: Complemental strand, 5382204 - 5381993
Alignment:
Q  22 ccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnnnnnngtacttgatgattag 121  Q
    ||||||||||||||||| | |||||||||||||||||| ||  |||  ||| |||||||||||||||||||| |||||       |||||| || ||| |    
T  5382204 ccaataaagaaacaagctatgtcaaggaatatttctttttcgctatcgtcatttaaaccatcatagcttatttttaacttccgttgtacttcatcattgg 5382105  T
Q  122 gaattgctttgagtttgttcaatacgctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaaagctagtggcaatcccccaga 221  Q
    |||||  ||||| ||| | |||||| | || ||| |||| |||   ||| ||||| |||   || ||||||||||| | |||||| ||||||||||||||    
T  5382104 gaattattttgattttctccaatacacacttccaatctgctactcccctttcaaacaaaaaagaaccaaggacttctagagctagaggcaatcccccaga 5382005  T
Q  222 atactcaactat 233  Q
     || ||||||||    
T  5382004 gtagtcaactat 5381993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 5175440 - 5175217
Alignment:
Q  3 aacatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnn 102  Q
    |||||||||||   |||||||||||||||||||||| ||||| |||||||||  |||||    || |||   ||||||||||||||||||| |||||       
T  5175440 aacatcatttctgtccatcccaataaagaaacaagctacgtcgaggaatattgatttctggtaatcatcgtctaaaccatcatagcttatttttaacttc 5175341  T
Q  103 nnnngtacttgatgattaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaaag 202  Q
        ||||||  | ||||||||||  ||  ||||| |||||||| |  | ||||||||||||| || | ||||| ||||    |||||| ||||| | ||    
T  5175340 ttttgtactttgtcattaggaattctttctagtttcttcaatacacaattccattctgttaccttcttctcaaacaaatagcgcccaagaacttctagag 5175241  T
Q  203 ctagtggcaatcccccagaatact 226  Q
    |||  |||||||||||||||||||    
T  5175240 ctaacggcaatcccccagaatact 5175217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 5277267 - 5277045
Alignment:
Q  3 aacatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnn 102  Q
    |||||||||||   |||||||||||||||||||||| ||||| |||||||||  |||||    || |||   ||||||||||||||||||| |||||       
T  5277267 aacatcatttctgtccatcccaataaagaaacaagctacgtcgaggaatattgatttctggtaatcatcgtctaaaccatcatagcttatttttaacttc 5277168  T
Q  103 nnnngtacttgatgattaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaaag 202  Q
        ||||||  | ||||||||||  ||  ||||| |||||||| |  | ||||||||||||| || | ||||| ||||    |||||| ||||| | ||    
T  5277167 ttttgtactttgtcattaggaattctttctagtttcttcaatacacaattccattctgttaccttcttctcaaacaaatagcgcccaagaacttctagag 5277068  T
Q  203 ctagtggcaatcccccagaatac 225  Q
    |||  ||||||||||||||||||    
T  5277067 ctaacggcaatcccccagaatac 5277045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 5431981 - 5431847
Alignment:
Q  3 aacatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnn 102  Q
    ||||||||||||  || | ||||||||||||||||| | ||||||||||||| ||||||  |  | |||   ||||||||||||||||||| |||||       
T  5431981 aacatcatttcgctccttaccaataaagaaacaagctatgtcaaggaatattgctttctgggatttatcgtctaaaccatcatagcttatttttaactta 5431882  T
Q  103 nnnngtacttgatgattaggaattgctttgagttt 137  Q
        |||||| || ||| ||||||| |||||||||    
T  5431881 ttttgtactttattattgggaattgttttgagttt 5431847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 5445651 - 5445415
Alignment:
Q  3 aacatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnn 102  Q
    |||||||||| |  ||||||| | |||||||||||| | || |||||||||||||||||| | || ||   ||||||||||||| || || ||||||       
T  5445651 aacatcattttggtccatcccgacaaagaaacaagcaatgtgaaggaatatttctttctcagcatgat---ttaaaccatcataactcatccttaacttc 5445555  T
Q  103 nnnngtacttgatgattaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaaag 202  Q
        | ||||||| || |||||||  ||||||| | | ||||||    ||||| |||| | || || | | ||| ||||  |||||||||||||| | ||    
T  5445554 ttctgcacttgatcataaggaattcttttgagtgtctccaatacaagttcccactctgattccgtcttattaaacaaataagacccaaggacttcaagag 5445455  T
Q  203 ctagtggcaatcccccagaatactcaactatattcttgga 242  Q
    |||| ||||||||| ||||||| ||||||| ||| |||||    
T  5445454 ctagcggcaatccctcagaatattcaactacatttttgga 5445415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 4322531 - 4322759
Alignment:
Q  4 acatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnnn 103  Q
    |||||||||||| |||||||||||||||||||||| | |||||||||||||  |||||| |||| |||| |||| ||||| ||||||||| |||||        
T  4322531 acatcatttcgatccatcccaataaagaaacaagcaatgtcaaggaatattgatttctctgtatcatcatttaagccatcgtagcttatttttaacttct 4322630  T
Q  104 nnngtacttgatgattaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaaagc 203  Q
       ||||||||| ||| ||||||  ||||||||| | |||||| |    ||| |||||||||  ||| ||||| ||||  |||||||||||||| | |||    
T  4322631 gatgtacttgatcattgggaattcttttgagtttctccaatacacaaatccactctgttacctccctatcaaacaaataggacccaaggacttcaagagc 4322730  T
Q  204 tagtggcaatcccccagaatactcaacta 232  Q
    ||| ||||||| ||||||||||| |||||    
T  4322731 tagcggcaatctcccagaatactgaacta 4322759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 4334126 - 4333983
Alignment:
Q  3 aacatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnn 102  Q
    ||||||||||||  |||||||||||||||||||||| | |||||||||||||  |||||| |||| |||| |||||||||||||||||||| |||||       
T  4334126 aacatcatttcggtccatcccaataaagaaacaagctatgtcaaggaatattgatttctcagtatcatcatttaaaccatcatagcttatttttaacttc 4334027  T
Q  103 nnnngtacttgatgattaggaattgctttgagtttgttcaatac 146  Q
        ||||||||| ||| ||||||  ||||||||| | ||||||    
T  4334026 ttatgtacttgatcattgggaattattttgagtttctccaatac 4333983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 4125868 - 4126086
Alignment:
Q  3 aacatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnn 102  Q
    ||||||||||||  |||||||||| ||||||||||| | |||||||||||||  ||| || ||   |||| |||||||||||||||||||| |||||       
T  4125868 aacatcatttcggtccatcccaattaagaaacaagctatgtcaaggaatattgatttttctgt---atcatttaaaccatcatagcttatttttaacttc 4125964  T
Q  103 nnnngtacttgatgattaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaaag 202  Q
        ||||||||| ||| ||||||  ||||||||| | |||||| |    ||| |||| ||||  ||| ||||| ||||  || ||||||||||| | ||    
T  4125965 ttatgtacttgatcattgggaattcttttgagtttctccaatacacaaatccactctgatacctccctatcaaacaaataggatccaaggacttcaagag 4126064  T
Q  203 ctagtggcaatcccccagaata 224  Q
    ||||||||||||||||||||||    
T  4126065 ctagtggcaatcccccagaata 4126086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 4343515 - 4343419
Alignment:
Q  3 aacatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaac 99  Q
    ||||||||||||| |||||||||||||||||||||  | ||| ||||||||||||||||  |||| |||| |||||||||| ||||||||| |||||    
T  4343515 aacatcatttcgatccatcccaataaagaaacaagatatgtcgaggaatatttctttctgtgtatcatcatttaaaccatcgtagcttatttttaac 4343419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 25568567 - 25568340
Alignment:
Q  4 acatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnnn 103  Q
    |||| |||||| |||| |||||||||||||||||| | ||  |||||||| |||| ||  |||| |||| ||| | |||||||||||||| | |||        
T  25568567 acattatttcggaccaacccaataaagaaacaagctatgttgaggaatatatcttcctgagtatcatcatttagagcatcatagcttattttcaacttct 25568468  T
Q  104 nnngtacttgatgattaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcc--tgtcaaataaatgtgacccaaggacttccaaa 201  Q
       ||||||||   |||||||||  ||||||||| | ||||||  |||||||||||||||||  ||  | ||||| |||| ||||||||| ||||| | |    
T  25568467 tttgtacttgaccgttaggaattcttttgagtttttccaatacattctcccattctgttacccccccctatcaaacaaatatgacccaagcacttctaga 25568368  T
Q  202 gctagtggcaatcccccagaatactcaa 229  Q
    ||||| |||||||| |||||||||||||    
T  25568367 gctagcggcaatcctccagaatactcaa 25568340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 4358984 - 4358745
Alignment:
Q  3 aacatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnn 102  Q
    ||||||||| ||  |||| ||||||||||||||||  | ||||||||||||||||||||  |||| |||| ||||||||||||| |||||| |||||       
T  4358984 aacatcattccggtccattccaataaagaaacaagatatgtcaaggaatatttctttctgtgtatcatcatttaaaccatcataacttatttttaacttc 4358885  T
Q  103 nnnngtacttgatgattaggaattgctttgagtttgttcaatac-gctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaaa 201  Q
        | ||||||| ||| ||||||  ||| ||||| | |||||| | ||| ||| |||   | |  ||| ||||| ||||  |||||||||||||| | |    
T  4358884 ttatgcacttgatcattgggaattctttttagtttatccaatacagatct-ccactctaaaatctccctatcaaacaaataagacccaaggacttcaaga 4358786  T
Q  202 gctagtggcaatcccccagaatactcaactatattcttgga 242  Q
    ||||||||||||||| ||||||||| ||||| ||| |||||    
T  4358785 gctagtggcaatcccgcagaatacttaactacatttttgga 4358745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 4135210 - 4135300
Alignment:
Q  3 aacatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttatt 93  Q
    |||||| |||||  ||||||||||||||||| |||| | |||||||||||| ||| |||| || | |||| ||||||||||||||||||||    
T  4135210 aacatcgtttcggtccatcccaataaagaaaaaagcaatgtcaaggaatatatctctctcggtgtcatcatttaaaccatcatagcttatt 4135300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 4351803 - 4351713
Alignment:
Q  3 aacatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttatt 93  Q
    |||||||||||   | |||||||||||||||||||| | |||||||||||||  ||||||||| | |||| |||||||||  |||||||||    
T  4351803 aacatcatttctgtctatcccaataaagaaacaagctatgtcaaggaatattgatttctccgtgtcatcatttaaaccatggtagcttatt 4351713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 6814325 - 6814246
Alignment:
Q  4 acatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatc 83  Q
    |||||||||||  || ||||||||||||||||||| |  ||||||||||||| |||||| ||| ||||  ||||||||||    
T  6814325 acatcatttcggtccctcccaataaagaaacaagctatatcaaggaatatttgtttctctgtaaaatcttttaaaccatc 6814246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 6589466 - 6589531
Alignment:
Q  17 ccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccat 82  Q
    |||||||||||||||||||||| |  ||||||||||||| |||||| ||| ||||  |||||||||    
T  6589466 ccatcccaataaagaaacaagcaatatcaaggaatatttgtttctctgtaaaatcttttaaaccat 6589531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 6771740 - 6771681
Alignment:
Q  21 cccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaacc 80  Q
    |||||||||||||||||| |  ||||||||||||| ||||||| |||||||  |||||||    
T  6771740 cccaataaagaaacaagctatatcaaggaatatttgtttctccatataatcttttaaacc 6771681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 6674555 - 6674477
Alignment:
Q  5 catcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatc 83  Q
    ||||||||||  |||||||||||||||| ||||| |  ||||||||||||| |||||| |||  |||  ||||||||||    
T  6674555 catcatttcggtccatcccaataaagaagcaagctatatcaaggaatatttgtttctctgtaacatcttttaaaccatc 6674477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 6751398 - 6751336
Alignment:
Q  4 acatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgta 66  Q
    |||||||||||  |||| |||||||||||||| || |  ||||||||||||| ||||||||||    
T  6751398 acatcatttcggtccattccaataaagaaacaggctatatcaaggaatatttgtttctccgta 6751336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 6794994 - 6794916
Alignment:
Q  5 catcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatc 83  Q
    |||||||| || |||||||||||||||| ||||| |  ||||| ||||||| |||||| ||| ||||  ||||||||||    
T  6794994 catcattttgatccatcccaataaagaagcaagctatatcaagaaatatttgtttctcagtaaaatcttttaaaccatc 6794916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 6649605 - 6649548
Alignment:
Q  5 catcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctc 62  Q
    ||||||||||  |||| ||||||||||||||||| |  ||||||||||||| ||||||    
T  6649605 catcatttcggtccattccaataaagaaacaagcaatatcaaggaatatttgtttctc 6649548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 245
Target Start/End: Complemental strand, 8876375 - 8876133
Alignment:
Q  3 aacatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnn 102  Q
    ||||||||||||  |||||||||||||||||||||| | ||||||||||||||||||| |  ||| |||| ||| |||||||||||||||| |||||       
T  8876375 aacatcatttcggtccatcccaataaagaaacaagctatgtcaaggaatatttctttcgcaatatcatcatttagaccatcatagcttatttttaacttc 8876276  T
Q  103 nnnngtacttgatgattaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaaag 202  Q
        ||||||||| ||| || |||  ||||||||| | |||||| |  | ||| || | ||||  ||| ||||| |||| ||| ||||| ||||| | ||    
T  8876275 tcatgtacttgatcattggggatttttttgagtttttccaatacacatttccactcggctacccccctttcaaacaaatatgatccaagaacttctagag 8876176  T
Q  203 ctagtggcaatcccccagaatactcaactatattcttggacat 245  Q
    || ||||||||||||||||||||||||||| |||  |||||||    
T  8876175 ctggtggcaatcccccagaatactcaactacatttctggacat 8876133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 36215320 - 36215549
Alignment:
Q  3 aacatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttattcttaacnnn 102  Q
    |||||||||||   |||||||||||||||||||||| | |||||||||||||||||||||||| | |||| ||| ||| |||||||| ||| |||||       
T  36215320 aacatcatttctgtccatcccaataaagaaacaagctatgtcaaggaatatttctttctccgtgtcatcatttagaccttcatagctcatttttaacttc 36215419  T
Q  103 nnnngtacttgatgattaggaattgctttgagtttgttcaatacgctctcccattctgttaccatcctgtcaaataaatgtgacccaaggacttccaaag 202  Q
        ||||||| | ||| ||||||  ||||||||||| |||||| | || ||| ||| ||| |  ||| ||||| |||| ||||||||||||||||| ||    
T  36215420 ttttgtacttggtcattgggaattcttttgagtttgtccaatacacacttccactctattatccccctatcaaacaaatatgacccaaggacttccagag 36215519  T
Q  203 ctagtggcaatcccccagaatactcaacta 232  Q
    |||  || | |  |||||||||||||||||    
T  36215520 ctaacggtagttgcccagaatactcaacta 36215549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 34727176 - 34727252
Alignment:
Q  17 ccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagcttatt 93  Q
    ||||||||||||||||| |||| |  |||||||||||||||||| |   || |||||||||||||||| ||||||||    
T  34727176 ccatcccaataaagaaaaaagcaatatcaaggaatatttctttcacatcatcatcacttaaaccatcaaagcttatt 34727252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 10096 - 10184
Alignment:
Q  3 aacatcatttcgaaccatcccaataaagaaacaagccacgtcaaggaatatttctttctccgtataatcacttaaaccatcatagctta 91  Q
    |||||| |||||  |||||||||||||||||||||| | |||||||||||| ||||| || |||| |||| ||||||||||||||||||    
T  10096 aacatcgtttcggtccatcccaataaagaaacaagctatgtcaaggaatatatctttttctgtatcatcatttaaaccatcatagctta 10184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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