View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13005_low_14 (Length: 227)
Name: NF13005_low_14
Description: NF13005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13005_low_14 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34262341 - 34262567
Alignment:
| Q |
1 |
cttaaaatgtatcattattaaccatacttgacaagaaaaaagtacattgattgaacactactaaatttaaccaagnnnnnnnnnnnctacaaccttagaa |
100 |
Q |
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| T |
34262341 |
cttaaaatgtatcattattaaccatacttgacaagaaaaaagtacattgattgaacactactaaatttaaccaagaaaaaaaaaaactacaaccttagaa |
34262440 |
T |
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| Q |
101 |
ctaattggtttgaatgaaaatgaacgcctcttacaagaaaacattttatgttttttcttgattcatggtatcacatagagctatttctttcttctcctgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34262441 |
ctaattggtttgaatgaaaatgaacgcctcttacaagaaaacattttatgttttttcttgattcatggtatcacatagagctatttctttcttctcttgc |
34262540 |
T |
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| Q |
201 |
tgatccattgtatcacaaagaacaatc |
227 |
Q |
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|||||||||||||||||||||||||| |
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| T |
34262541 |
cgatccattgtatcacaaagaacaatc |
34262567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 35621419 - 35621488
Alignment:
| Q |
158 |
ttgattcatggtatcacatagagctatttctttcttctcctgctgatccattgtatcacaaagaacaatc |
227 |
Q |
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| T |
35621419 |
ttgattcatggcatcatatatagctaattctttcttctcttgttgatccattgtatcacaaagaacaatc |
35621488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 37576287 - 37576503
Alignment:
| Q |
3 |
taaaatgtatcattattaaccatacttgacaagaaaaaagtacattgattgaacactactaaatttaaccaagnnnnnnnnnnnctacaaccttagaact |
102 |
Q |
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| T |
37576287 |
taaaatgtatcattattaaccatacttgacaagaaaaaagtacattgattgaacacta---aatttaaccaagaaaaaaaataactacaacctt-gaact |
37576382 |
T |
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| Q |
103 |
aattggtttgaatgaaaatgaac-gcctcttacaagaaaacattttatgttttttcttgattcatggtatcacatagagctatttctttcttctcctgct |
201 |
Q |
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| T |
37576383 |
aattggtttgaatgaaaatgaactgcctcttacaagaaaacattttatgttttttcttgattcatggtatcacatagagctatttctttcttctcttgct |
37576482 |
T |
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| Q |
202 |
gatccattgtatcacaaagaa |
222 |
Q |
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| T |
37576483 |
gatccattgtaccacaaagaa |
37576503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 37602181 - 37602245
Alignment:
| Q |
3 |
taaaatgtatcattattaaccatacttgacaagaaaaaagtacattgattgaacactactaaatttaac |
71 |
Q |
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| T |
37602181 |
taaaatgtatcattattaaccctactt-acaag-aaaaagtatatt--ttgaacactactaaatttaac |
37602245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 37602341 - 37602386
Alignment:
| Q |
182 |
tatttctttcttctcctgctgatccattgtatcacaaagaacaatc |
227 |
Q |
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| T |
37602341 |
tatttctctcctctcttgttgatccattgtatcacaaagaacaatc |
37602386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 14579288 - 14579358
Alignment:
| Q |
156 |
tcttgattcatggtatcacatagagctatttctttcttctcctgctgatccattgtatcacaaagaacaat |
226 |
Q |
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| T |
14579288 |
tcttgattcatggcatcagacatagctatttctttcttctcttgttgatccattgtatcacaaagaacaat |
14579358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 14544293 - 14544228
Alignment:
| Q |
162 |
ttcatggtatcacatagagctatttctttcttctcctgctgatccattgtatcacaaagaacaatc |
227 |
Q |
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||||||| |||||| | |||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
14544293 |
ttcatggcatcacacaaagctatttctttcttctcttgttgatccattgtatcacaaagaacaatc |
14544228 |
T |
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