View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13005_low_2 (Length: 559)
Name: NF13005_low_2
Description: NF13005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13005_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 12 - 544
Target Start/End: Complemental strand, 41717367 - 41716834
Alignment:
| Q |
12 |
aatactcttgatgcacggctggatgtagtgttccgtaaaaagcttccggaggtaaatttttgtgtgcattgctattgtcatgttctgtgattcgtttctc |
111 |
Q |
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| T |
41717367 |
aatactcttgatgcacggctggatgtagtgttccgtaaaaagcttccggaggtaattttttgtgtgcattgctattgtcatgttctgtgattcgtttctc |
41717268 |
T |
|
| Q |
112 |
ttcattataatagtattgttgactttcatattattttcaactagaaaggcagttatttaa-atgacatttgaactttgacattgaaatataattcttcga |
210 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41717267 |
ttcattataatagtattgtcgactgtcatattattttcaactagaaaggcagttattttttatgacatttgaactttgacattgaaatataattcttcga |
41717168 |
T |
|
| Q |
211 |
ccgagtcatactcatacacactttgataaacaactaagacaattaacttgaaatattgtacgtattaaggggaagataaccggggagggacttcagggct |
310 |
Q |
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| T |
41717167 |
ccgagtcatactcatacacactttgataaacaactaagacaattaacttgaaatattgtacgtattaaggggaagataaccggggagggacttcagggct |
41717068 |
T |
|
| Q |
311 |
aaggccgacaattagtatgcaacaaagaaaaaagtagttcttcaaacaaaactctgtgaactagctgctcactcccagataacttctagcattggcgatt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41717067 |
aaggccgacaattagtatgcaacaaagaaaaaagtatttcttcaaacaaaactctgtgaactagctgctcactcccagataacttctagcattggcgatt |
41716968 |
T |
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| Q |
411 |
ctgtttcctttctcaatgtgttttttcttggatcgtgatatgcacttcagtctttaatattctaaacttctgaaattttggcttgaaaaccagagagatt |
510 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41716967 |
ctctttcctttctcaatgtgttttttcttggatcgtgatatgcacttcagtctttaatattctaaacttctgaaattttggcttgaaaaccagagagatt |
41716868 |
T |
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| Q |
511 |
tttccccttctctctgtttgcacctttgtatttg |
544 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
41716867 |
tttccccttctctctgtttgcacctttgtatttg |
41716834 |
T |
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