View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13005_low_4 (Length: 531)
Name: NF13005_low_4
Description: NF13005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13005_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 6 - 524
Target Start/End: Complemental strand, 28916600 - 28916083
Alignment:
| Q |
6 |
caagaatatggtcggatcttgaatgagtgctaacatacaattcaccgcagagataacgaccattggaaatctccagcaccggaatcttgtaaaatcaata |
105 |
Q |
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| T |
28916600 |
caagaaaatgatcggatctcgcatgagcgctaacatacaattcaccgcagagataacgaccattggaaatctccagcaccggaatcttgtaaaatcaaca |
28916501 |
T |
|
| Q |
106 |
ggctttgcggttaatgagaaaattttctcagtatgttgaagactaagtgtgtcataacacatacatggtatttgttcaaaatcttcttccattagaatct |
205 |
Q |
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| T |
28916500 |
ggctttgcggttaatgagaaaattttctcagtatgttgaagactaagtgggtcataacacatacatggtatttgttcaaaatcttctaacattagaatct |
28916401 |
T |
|
| Q |
206 |
ggcttatatatatatttcaatgtttctgaaaaatcagcatcttcaaatgtagaatctttggttgcatcagaagaaaaaacgggtggctccgaaatgggct |
305 |
Q |
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| T |
28916400 |
ggcttatatat----ttcaatgtttctgaaagatcagcatcttcaaatgtagaatctttggttgcattagaagaaaaaacggatggcttcgaaatgggtt |
28916305 |
T |
|
| Q |
306 |
ggcccacgtaagggttggtgatggtgaaatcgttaaggtttggatttggatatggatcggagagaaggattaggttaccttggtcatcgaatttgtaggt |
405 |
Q |
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| T |
28916304 |
ggcccacgtaagggttggtgatggtgaaatcgttaaggtttggatttggatctggatcagagagaaggattaggttaccttggtcatcgaatttgtaggt |
28916205 |
T |
|
| Q |
406 |
ggtttcgaatcctacaaaattcggatccatagcatgaagttcggtagttgtttgattct---accatggattttgtgtttgagtgaaatgaaacattatg |
502 |
Q |
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| T |
28916204 |
ggtttcgaaatcaacaaaattcggatccatagcatgaagttcggtagttgtttgattctacaacaatggtttttgtgtttgagtgaaatgaaacattatg |
28916105 |
T |
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| Q |
503 |
aaaaagatgtagatattttgac |
524 |
Q |
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| T |
28916104 |
aaaaaggtgtagatattttgac |
28916083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 122 - 501
Target Start/End: Complemental strand, 41596890 - 41596521
Alignment:
| Q |
122 |
agaaaattttctcagtatgttgaagactaagtgtgtcataacacatacatggtatttgttcaaaatcttcttccattagaatctggcttatatatatatt |
221 |
Q |
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| T |
41596890 |
agaaaattttctcagtatgttgaagactaagtgggtcataacacatacatggtttttgttcaaattcttcttccattaaaatctggcttatatat----t |
41596795 |
T |
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| Q |
222 |
tcaatgtttctgaaaaatcagcatcttcaaatgtagaatctttggttgcatcagaagaaaaaacgggtggctccgaaatgggctggcccacgtaagggtt |
321 |
Q |
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||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||| ||| ||||||| |||||||| |
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| T |
41596794 |
tcactgtttctgaaaaatcagcatcttcaaaggtagaatctttggttgtatcagaagaaaaaactagtggctccgaattggatgggcccacataagggtt |
41596695 |
T |
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| Q |
322 |
ggtgatggtgaaatcgttaaggtttggatttggatatggatcggagagaaggattaggttaccttggtcatcgaatttgtaggtggtttcgaatcctaca |
421 |
Q |
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||||||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||| |||||||||||||||||||| ||||||||||| ||| |
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| T |
41596694 |
ggtgatggtgaaatcgtcaaggtttggattt------ggatcagagagaaggattaagttaccatggtcatcgaatttgtaggttgtttcgaatccgaca |
41596601 |
T |
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| Q |
422 |
aaattcggatccatagcatgaagttcggtagttgtttgattctaccatggattttgtgtttgagtgaaatgaaacattat |
501 |
Q |
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| T |
41596600 |
aaattcggatccatagcatgaagttggttagttgtttgattctacgatggtttttgtgttcaagtgaaatgaaacattat |
41596521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 122 - 342
Target Start/End: Complemental strand, 27326153 - 27325941
Alignment:
| Q |
122 |
agaaaattttctcagtatgttgaagactaagtgtgtcataacacatacatggtatttgttcaaaatcttcttccattagaatctggcttatatatatatt |
221 |
Q |
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||||||||||||||||| |||||||||| | ||||||||||||||||||| ||||||||||||||| |||||| | ||| |||||||||||| | |
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| T |
27326153 |
agaaaattttctcagta----gaagactaagcgggtcataacacatacatggtttttgttcaaaatctttttccatcaaaatatggcttatatat----t |
27326062 |
T |
|
| Q |
222 |
tcaatgtttctgaaaaatcagcatcttcaaatgtagaatctttggttgcatcagaagaaaaaacgggtggctccgaaatgggctggcccacgtaagggtt |
321 |
Q |
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||| || ||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| || ||| ||||||| |||| ||| |
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| T |
27326061 |
tcactgcttctgaaaaattagcatctttaaaggtagaatctttggttgcatcagaagaaaaaacgagtggctccaaattggatgggcccacataagagtt |
27325962 |
T |
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| Q |
322 |
ggtgatggtgaaatcgttaag |
342 |
Q |
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|||||| |||||||| ||||| |
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| T |
27325961 |
ggtgatagtgaaatctttaag |
27325941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 358 - 439
Target Start/End: Complemental strand, 27324991 - 27324910
Alignment:
| Q |
358 |
tggatcggagagaaggattaggttaccttggtcatcgaatttgtaggtggtttcgaatcctacaaaattcggatccatagca |
439 |
Q |
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|||||| ||||||| |||||||||| | ||||||||||||||| |||| ||||||||||| |||||||| |||||||||||| |
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| T |
27324991 |
tggatcagagagaaagattaggttaacatggtcatcgaatttgcaggttgtttcgaatccaacaaaatttggatccatagca |
27324910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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