View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13005_low_5 (Length: 522)
Name: NF13005_low_5
Description: NF13005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13005_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 324
Target Start/End: Original strand, 671615 - 671918
Alignment:
| Q |
9 |
agcataggacaaaaggaccataataattttcaaagttacaaagaaatatcaatcggtgatagttatcctcgatcccaaagtcaccataaacaatttagaa |
108 |
Q |
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| T |
671615 |
agcatgggacaaaaggatcataataattttcaaagttacaaagaaatatgaatcggtgatagttatcctcgatcccaaagtcaccataaacaatttagaa |
671714 |
T |
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| Q |
109 |
aattgttttttctccaagccaagaattggcaaggccacatcgcaaaaaatacgtgcagtggtgaaaattaagtagaggtgcagatgtgggccacatgggg |
208 |
Q |
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| T |
671715 |
aattgttttttctccaagtcaaaaattgccaaggccacatcgcaaaaaatacgtgcagtggtgaaaatt---tagaggtgcagatgtgagccacatgggg |
671811 |
T |
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| Q |
209 |
atgaaatttcatttttggaattttagaaaaggagaagcggtgtgtgctacagtaaattttaatatatccgtgaaatttcgtataaatatatatccgtaca |
308 |
Q |
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| T |
671812 |
atgaaatttc---------attttaggaaaggagaagcggtgtgtgctacagtaaattttaatatatccgtgaaatttcgtataaatatatatccgtaca |
671902 |
T |
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| Q |
309 |
actaagcatttccctt |
324 |
Q |
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| T |
671903 |
attaagcatttccctt |
671918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 336 - 390
Target Start/End: Original strand, 669385 - 669439
Alignment:
| Q |
336 |
agtgctaaacagtacgggacttgtgcgtacgaattttcacggatgcgcccttaag |
390 |
Q |
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| T |
669385 |
agtgctaaacagtacgggacttgtgcgtacgaattttcacgaatgcgcccttaag |
669439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 420
Target Start/End: Original strand, 670992 - 671025
Alignment:
| Q |
387 |
taagagaaaatgcatccctttcttaatttcatac |
420 |
Q |
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| T |
670992 |
taagagaaaatgcatcccttttttaatttcatac |
671025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 95 - 322
Target Start/End: Complemental strand, 22256758 - 22256553
Alignment:
| Q |
95 |
taaacaatttagaaaattgttttttctccaagccaagaattggcaaggccacatcgcaaaaaatacgtgcagtggtgaaaattaagtagaggtgcagatg |
194 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
22256758 |
taaacaatttagaaaattgttttttctccaagccaaaaattgctaaggccacattgcaaaaaatacgtgcagtggtgaaaatgaagtagaggtgcaggtg |
22256659 |
T |
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| Q |
195 |
tgggccacatggggatgaaatttcatttttggaattttagaaaaggagaagcggtgtgtgctacagtaaattttaatatatccgtgaaatttcgtataaa |
294 |
Q |
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| T |
22256658 |
tgtgccacatggggatgaaatttcgtt--------------------aaagcggtgtgtgctacggtaaattttaatatatccgtgaaatttcgtat--a |
22256581 |
T |
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| Q |
295 |
tatatatccgtacaactaagcatttccc |
322 |
Q |
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|||||| ||||||| |||||||||||| |
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| T |
22256580 |
gatatattcgtacaattaagcatttccc |
22256553 |
T |
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