View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13005_low_7 (Length: 462)
Name: NF13005_low_7
Description: NF13005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13005_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 7e-90; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 27 - 202
Target Start/End: Complemental strand, 3919724 - 3919549
Alignment:
| Q |
27 |
tcagtattttatctattgagttcagatttaacaataagattgtcatcaaagtaaggggacacagggcacatgggagatacgtacatgatgtttcattcac |
126 |
Q |
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| T |
3919724 |
tcagtattttatctattgagttcagatttaacaataagattgtcatcaaagtaaggggacacagggcacatgggagatacgtacatgatgtttcattcac |
3919625 |
T |
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| Q |
127 |
atatttttctatgtgatataacaatactagttagtagcacaaatgttcttaatatatgcatgatcaagtttagtat |
202 |
Q |
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| T |
3919624 |
atatttttctatgtgatataactatactagttagtagcacaaatgttcttaatatatacatgatcaagtttagtat |
3919549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 360 - 447
Target Start/End: Complemental strand, 3919394 - 3919307
Alignment:
| Q |
360 |
ggatagtagaattgctttacattgtgcaatccaaacaactttaagaaaataaaaactcatgtttgaagcatgaaatgcacgttgaggt |
447 |
Q |
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| T |
3919394 |
ggatagtagaattgctttacattgtgcaatccaaacaactttaagaaaataaaaactcacgtttgaagcatgaaacgcacgttgaggt |
3919307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 298
Target Start/End: Complemental strand, 3919494 - 3919453
Alignment:
| Q |
257 |
catacagactataaattaaccatataaattgattcacatggt |
298 |
Q |
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| T |
3919494 |
catacagactataaattaaccatataaattgattgacatggt |
3919453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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