View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13005_low_9 (Length: 346)
Name: NF13005_low_9
Description: NF13005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13005_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 41696591 - 41696386
Alignment:
| Q |
13 |
aatatgggtcacatgaattttattcaatagaaaagattgaattaaaaaataaatgttagatactagcatttttcatttagttttgagaagtgagcattat |
112 |
Q |
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| T |
41696591 |
aatatgggtcacatgaattttattcaatagaagagattgaattaaaaaataaatgttagatactagcatttttcatttagttttgagaagtgagcattaa |
41696492 |
T |
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| Q |
113 |
agtaaataacaaagggtattgctataaaacatccatgaaggtgtgatttaacacaaaacatctacatgataaagacaaaaatcatttctctttaatatgt |
212 |
Q |
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| T |
41696491 |
agtaaataacaaagcatattgctataaaacatccatgaatgtgtgatttagcacaaaacacctatatgataaagacaaaaatcatttctctttaatatgt |
41696392 |
T |
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| Q |
213 |
atttat |
218 |
Q |
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|||||| |
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| T |
41696391 |
atttat |
41696386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 214 - 346
Target Start/End: Complemental strand, 41696352 - 41696220
Alignment:
| Q |
214 |
tttatcatgtaggtgttgagtgctaaattacaccttcatgagtgttttatagcaatacccaataacaaaatagttatagatgtctcgtctgactaagtta |
313 |
Q |
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||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
41696352 |
tttatcacgtaggtgttgagtgctaaatcacaccttcatgaatgttttatagcaatacccaataacaaaatagctatagatgtctcgtttgactaagtta |
41696253 |
T |
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| Q |
314 |
gttgaaccttatcatgtttgatgtggattcaaa |
346 |
Q |
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| T |
41696252 |
gtcgagacttatcatgtttgatgtagattcaaa |
41696220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 41696293 - 41696360
Alignment:
| Q |
126 |
gggtattgctataaaacatccatgaaggtgtgatttaacacaaaacatctacatgataaagacaaaaa |
193 |
Q |
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| T |
41696293 |
gggtattgctataaaacattcatgaaggtgtgatttagcactcaacacctacgtgataaagacaaaaa |
41696360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 41696419 - 41696475
Alignment:
| Q |
214 |
tttatcatgtaggtgttgagtgctaaattacaccttcatgagtgttttatagcaata |
270 |
Q |
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| T |
41696419 |
tttatcatataggtgttttgtgctaaatcacacattcatggatgttttatagcaata |
41696475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 38875290 - 38875223
Alignment:
| Q |
151 |
aggtgtgatttaacacaaaacatctacatgataaagacaaaaa--tcatttctctttaatatgtattt |
216 |
Q |
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| T |
38875290 |
aggtgtgatttagcacacatcacctacatgataaagacaaaaaagtcatttctctttaatatgtattt |
38875223 |
T |
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