View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13006_high_10 (Length: 579)

Name: NF13006_high_10
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13006_high_10
NF13006_high_10
[»] scaffold0179 (2 HSPs)
scaffold0179 (222-403)||(23426-23608)
scaffold0179 (222-396)||(11514-11689)
[»] chr8 (9 HSPs)
chr8 (16-223)||(41381638-41381849)
chr8 (397-555)||(41378825-41378982)
chr8 (18-78)||(41381865-41381925)
chr8 (78-131)||(36339946-36339999)
chr8 (16-71)||(17505998-17506053)
chr8 (27-72)||(36339983-36340028)
chr8 (16-66)||(23666702-23666752)
chr8 (78-128)||(41381903-41381953)
chr8 (174-223)||(36339832-36339881)
[»] chr4 (19 HSPs)
chr4 (15-223)||(11910738-11910946)
chr4 (78-220)||(4887799-4887941)
chr4 (4-78)||(12386982-12387056)
chr4 (16-80)||(12387050-12387114)
chr4 (15-78)||(11910949-11911012)
chr4 (78-125)||(31982474-31982521)
chr4 (78-131)||(52631208-52631261)
chr4 (20-71)||(18175032-18175083)
chr4 (15-66)||(31982566-31982617)
chr4 (78-131)||(19752701-19752754)
chr4 (78-131)||(19787052-19787105)
chr4 (78-128)||(11910990-11911040)
chr4 (42-72)||(19752738-19752768)
chr4 (42-72)||(19787038-19787068)
chr4 (78-124)||(31982607-31982653)
chr4 (173-223)||(52631093-52631143)
chr4 (174-223)||(19752588-19752637)
chr4 (174-223)||(19787169-19787218)
chr4 (40-72)||(52631245-52631277)
[»] chr5 (11 HSPs)
chr5 (397-555)||(17527924-17528082)
chr5 (52-223)||(35046190-35046351)
chr5 (16-78)||(35046351-35046413)
chr5 (78-131)||(32243572-32243625)
chr5 (78-131)||(17131277-17131330)
chr5 (21-65)||(19285134-19285178)
chr5 (42-72)||(17131314-17131344)
chr5 (42-72)||(32243609-32243639)
chr5 (31-72)||(11305221-11305262)
chr5 (174-223)||(17131162-17131211)
chr5 (174-223)||(32243459-32243508)
[»] scaffold0259 (1 HSPs)
scaffold0259 (397-555)||(7580-7737)
[»] chr6 (2 HSPs)
chr6 (397-555)||(31392766-31392925)
chr6 (19-62)||(32093253-32093296)
[»] chr2 (4 HSPs)
chr2 (397-481)||(37440838-37440922)
chr2 (78-125)||(27408219-27408266)
chr2 (15-66)||(27408124-27408175)
chr2 (77-125)||(20007714-20007762)
[»] chr3 (4 HSPs)
chr3 (397-555)||(41073790-41073949)
chr3 (13-78)||(35085287-35085352)
chr3 (79-130)||(35085331-35085382)
chr3 (13-57)||(35085270-35085314)
[»] scaffold0015 (3 HSPs)
scaffold0015 (78-131)||(63243-63296)
scaffold0015 (42-72)||(63229-63259)
scaffold0015 (174-223)||(63360-63409)
[»] chr7 (12 HSPs)
chr7 (78-131)||(35819271-35819324)
chr7 (77-125)||(37707258-37707306)
chr7 (21-72)||(26246956-26247007)
chr7 (20-71)||(27873826-27873877)
chr7 (78-125)||(29914676-29914723)
chr7 (78-124)||(21493765-21493811)
chr7 (42-72)||(21493795-21493825)
chr7 (78-124)||(26246926-26246972)
chr7 (42-72)||(35819308-35819338)
chr7 (174-223)||(21493912-21493961)
chr7 (179-223)||(4896559-4896603)
chr7 (98-130)||(4896676-4896708)
[»] chr1 (7 HSPs)
chr1 (16-71)||(28989815-28989870)
chr1 (19-62)||(48504158-48504201)
chr1 (81-123)||(19027394-19027436)
chr1 (98-128)||(19027492-19027522)
chr1 (78-131)||(6161742-6161795)
chr1 (21-62)||(12156504-12156545)
chr1 (14-54)||(34972736-34972776)
[»] scaffold0002 (1 HSPs)
scaffold0002 (23-71)||(294898-294946)


Alignment Details
Target: scaffold0179 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 222 - 403
Target Start/End: Original strand, 23426 - 23608
Alignment:
Q  222 atgaaatcgcgagttgcatatcaaacacgaaatcgagttgcagtcatagggaaaaagagagactccaatggagtgtggtggtgtgaaatcgtatatgagt 321  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||    
T  23426 atgaaatcgcgagttgcatatagaacacgaaatcgagttgcagtcataggaaaaaagagagactcaaatggagtgtggtggtgtgaaatcgtgtatgagt 23525  T
Q  322 ctggaatatgagagga-gagagaaattaggttagagagaagtgtgtaattggattgtgggagagataaatgtgtggtgtgtgg 403  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  23526 ctggaatatgagaggaggagagaaattaggttagagaaaagtgtgtaattggattgtgggagagataaatgtgtggcgtgtgg 23608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 222 - 396
Target Start/End: Complemental strand, 11689 - 11514
Alignment:
Q  222 atgaaatcgcgagttgcatatcaaacacgaaatcgagttgcagtcatagggaaaaagagagactccaatggagtgtggtggtgtgaaatcgtatatgagt 321  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||    
T  11689 atgaaatcgcgagttgcatattgaacacgaaatcgagttgcagtcataggaaaaaagagagactctaatggagtgtggtggtgtgaaatcgtgtatgagt 11590  T
Q  322 ctggaatatgagagga-gagagaaattaggttagagagaagtgtgtaattggattgtgggagagataaatgtgtgg 396  Q
    |||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  11589 ctggaatatgagaggaggagagaaattaggttagagaaaattgtgtaattggattgtgggagagataaatgtgtgg 11514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 3e-77; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 41381849 - 41381638
Alignment:
Q  16 tccgtcagtaattactgagggatt----attccctcagtaatgctttgtcaaaactacctcatcattttgtcaaaaccacctctagattactgagggaaa 111  Q
    |||||||||||||||||| |||||    |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41381849 tccgtcagtaattactgacggattggtaattccctccgtaaagctttgtcaaaactacctcatcattttgtcaaaaccacctctagattactgacggaaa 41381750  T
Q  112 attccgccagtaatatttatgaagaatcacattaccgaggaaaaattctgttagtaatgcattttccactttttaaatataaataaagaaataaaattaa 211  Q
    |||| |||| ||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||||| || |||||||||||||||||||||||||    
T  41381749 attctgccaataatatttatggagaatcacattaccaaggaaaaactctgtcagtaatgcattttccacttatttaatataaataaagaaataaaattaa 41381650  T
Q  212 tcaaacacaaat 223  Q
    ||||||||||||    
T  41381649 tcaaacacaaat 41381638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 397 - 555
Target Start/End: Complemental strand, 41378982 - 41378825
Alignment:
Q  397 tgtgtggaaaaatgttgaagaaatttagtaagatggtagagaattgttttagagagatgatgtttgttgtgaatgagagctactgagaaggagtatccgc 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  41378982 tgtgtggaaaaatgttgaagaaatttagtaagatggtagagaattgttttagagagatgatgtttgttgtgaatgagagctactgagaaggagtatcggt 41378883  T
Q  497 gnnnnnnnntcaaattgcattacattactggcggatttggtttcaatactgacggattt 555  Q
    |        ||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  41378882 g-aaaaaaatcaaattgcattacattactgacggatttgatttcaatactgacggattt 41378825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 41381865 - 41381925
Alignment:
Q  18 cgtcagtaattactgagggattattccctcagtaatgctttgtcaaaactacctcatcatt 78  Q
    ||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||    
T  41381865 cgtcagtaattactgaggggttattccctccgtaaagctttgtcaaaactacctcatcatt 41381925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 36339999 - 36339946
Alignment:
Q  78 tttgtcaaaaccacctctagattactgagggaaaattccgccagtaatatttat 131  Q
    ||||||||||| ||||||  |||||||||||||||||||||||||||| |||||    
T  36339999 tttgtcaaaactacctctgcattactgagggaaaattccgccagtaatgtttat 36339946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 17505998 - 17506053
Alignment:
Q  16 tccgtcagtaattactgagggattattccctcagtaatgctttgtcaaaactacct 71  Q
    |||||||||||||||||  ||| || ||||||||||||||||||||| ||||||||    
T  17505998 tccgtcagtaattactggcggaataatccctcagtaatgctttgtcagaactacct 17506053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 36340028 - 36339983
Alignment:
Q  27 ttactgagggattattccctcagtaatgctttgtcaaaactacctc 72  Q
    ||||||| ||| || |||||||||||||||||||||||||||||||    
T  36340028 ttactgacggaataatccctcagtaatgctttgtcaaaactacctc 36339983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 23666702 - 23666752
Alignment:
Q  16 tccgtcagtaattactgagggattattccctcagtaatgctttgtcaaaac 66  Q
    |||||||||||||||||  |||  | |||||||||||||||||||||||||    
T  23666702 tccgtcagtaattactggcggaaaaatccctcagtaatgctttgtcaaaac 23666752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 41381903 - 41381953
Alignment:
Q  78 tttgtcaaaaccacctctagattactgagggaaaattccgccagtaatatt 128  Q
    ||||||||||| |||||   |||||||||||||||||||| ||||||||||    
T  41381903 tttgtcaaaactacctcatcattactgagggaaaattccgtcagtaatatt 41381953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 36339881 - 36339832
Alignment:
Q  174 tttccactttttaaatataaataaagaaataaaattaatcaaacacaaat 223  Q
    |||||||||||||| | ||| ||||||||||||||| || ||||||||||    
T  36339881 tttccactttttaattttaattaaagaaataaaatttattaaacacaaat 36339832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 3e-71; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 11910946 - 11910738
Alignment:
Q  15 ttccgtcagtaattactgagggattattccctcagtaatgctttgtcaaaactacctcatcattttgtcaaaaccacctctagattactgagggaaaatt 114  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  11910946 ttccgtcagtaattattgagggattattccctcagtaatgctttgtcaaaactacctcaccattttgtcaaaaccacctctacattactgagggaaaatt 11910847  T
Q  115 ccgccagtaatatttatgaagaatcacattaccgaggaaaaattctgttagtaatgcattttccactttttaaatataaataaagaaataaaattaatca 214  Q
    ||||||||||||||||||  ||| |||||||| | || |||||| ||| |||||||||||||||||||||   ||| || |||||||| ||||||||| |    
T  11910846 ccgccagtaatatttatggcgaaccacattactgtgggaaaattttgtcagtaatgcattttccacttttctgataaaattaaagaaacaaaattaatta 11910747  T
Q  215 aacacaaat 223  Q
    |||||||||    
T  11910746 aacacaaat 11910738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 78 - 220
Target Start/End: Original strand, 4887799 - 4887941
Alignment:
Q  78 tttgtcaaaaccacctctagattactgagggaaaattccgccagtaatatttatgaagaatcacattaccgaggaaaaattctgttagtaatgcattttc 177  Q
    ||||||||||| | ||||  |||||||||||||||||| | |||||| ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||    
T  4887799 tttgtcaaaactatctcttcattactgagggaaaattcagtcagtaacatttatggagaatcacattaccgaggaaaaattatgtcagtaatgcattttc 4887898  T
Q  178 cactttttaaatataaataaagaaataaaattaatcaaacaca 220  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  4887899 cacttttttaatataaataaagaaataaaattaatcaaacaca 4887941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 12387056 - 12386982
Alignment:
Q  4 tgacggacctattccgtcagtaattactgagggattattccctcagtaatgctttgtcaaaactacctcatcatt 78  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||| |||||    
T  12387056 tgacggacctattccgtcagtaattactaaaggattattccctcagtaatgctttgtcaaaactatctcttcatt 12386982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 12387050 - 12387114
Alignment:
Q  16 tccgtcagtaattactgagggattattccctcagtaatgctttgtcaaaactacctcatcatttt 80  Q
    ||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  12387050 tccgtcagtgattagtgaggggttattccctcagtaatgctttgtcaaaactacctcaccatttt 12387114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 11910949 - 11911012
Alignment:
Q  15 ttccgtcagtaattactgagggattattccctcagtaatgctttgtcaaaactacctcatcatt 78  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||    
T  11910949 ttccgttagtaattattgagggattattccctcagtaatgctttgtcaaaactatctcttcatt 11911012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 31982521 - 31982474
Alignment:
Q  78 tttgtcaaaaccacctctagattactgagggaaaattccgccagtaat 125  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||    
T  31982521 tttgtcaaaaccacctttacattactgagggaaaattccgccagtaat 31982474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 52631261 - 52631208
Alignment:
Q  78 tttgtcaaaaccacctctagattactgagggaaaattccgccagtaatatttat 131  Q
    ||||||||||| ||||||  |||||||||||||||||||||||||||| |||||    
T  52631261 tttgtcaaaactacctctgcattactgagggaaaattccgccagtaatgtttat 52631208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 18175083 - 18175032
Alignment:
Q  20 tcagtaattactgagggattattccctcagtaatgctttgtcaaaactacct 71  Q
    |||||||||||||||||| || |||||||||| |||||||||| ||||||||    
T  18175083 tcagtaattactgagggaataatccctcagtactgctttgtcagaactacct 18175032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 31982566 - 31982617
Alignment:
Q  15 ttccgtcagtaattactgagggattattccctcagtaatgctttgtcaaaac 66  Q
    ||||| ||||||||||||||||| || |||||||||||| ||||||||||||    
T  31982566 ttccgccagtaattactgagggaataatccctcagtaatactttgtcaaaac 31982617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 19752754 - 19752701
Alignment:
Q  78 tttgtcaaaaccacctctagattactgagggaaaattccgccagtaatatttat 131  Q
    ||||||||||| ||||||  ||||||||| |||||||||||||||||| |||||    
T  19752754 tttgtcaaaactacctctgcattactgagagaaaattccgccagtaatgtttat 19752701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 19787052 - 19787105
Alignment:
Q  78 tttgtcaaaaccacctctagattactgagggaaaattccgccagtaatatttat 131  Q
    ||||||||||| ||||||  ||||||||| |||||||||||||||||| |||||    
T  19787052 tttgtcaaaactacctctgcattactgagagaaaattccgccagtaatgtttat 19787105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 11910990 - 11911040
Alignment:
Q  78 tttgtcaaaaccacctctagattactgagggaaaattccgccagtaatatt 128  Q
    ||||||||||| | ||||  |||||||||||||||||||| ||||||||||    
T  11910990 tttgtcaaaactatctcttcattactgagggaaaattccgtcagtaatatt 11911040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 72
Target Start/End: Complemental strand, 19752768 - 19752738
Alignment:
Q  42 tccctcagtaatgctttgtcaaaactacctc 72  Q
    |||||||||||||||||||||||||||||||    
T  19752768 tccctcagtaatgctttgtcaaaactacctc 19752738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 72
Target Start/End: Original strand, 19787038 - 19787068
Alignment:
Q  42 tccctcagtaatgctttgtcaaaactacctc 72  Q
    |||||||||||||||||||||||||||||||    
T  19787038 tccctcagtaatgctttgtcaaaactacctc 19787068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 31982607 - 31982653
Alignment:
Q  78 tttgtcaaaaccacctctagattactgagggaaaattccgccagtaa 124  Q
    ||||||||||||| ||| | |||||||||||||| ||||||||||||    
T  31982607 tttgtcaaaaccatctcaacattactgagggaaatttccgccagtaa 31982653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 52631143 - 52631093
Alignment:
Q  173 ttttccactttttaaatataaataaagaaataaaattaatcaaacacaaat 223  Q
    ||||||||||||||| | ||| ||||||||||||||| || ||||||||||    
T  52631143 ttttccactttttaattttaattaaagaaataaaatttattaaacacaaat 52631093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 19752637 - 19752588
Alignment:
Q  174 tttccactttttaaatataaataaagaaataaaattaatcaaacacaaat 223  Q
    |||||||||||||| | ||| ||||||||||||||| || ||||||||||    
T  19752637 tttccactttttaattttaattaaagaaataaaatttattaaacacaaat 19752588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 19787169 - 19787218
Alignment:
Q  174 tttccactttttaaatataaataaagaaataaaattaatcaaacacaaat 223  Q
    |||||||||||||| | ||| ||||||||||||||| || ||||||||||    
T  19787169 tttccactttttaattttaattaaagaaataaaatttattaaacacaaat 19787218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 52631277 - 52631245
Alignment:
Q  40 attccctcagtaatgctttgtcaaaactacctc 72  Q
    ||||||||| |||||||||||||||||||||||    
T  52631277 attccctcaataatgctttgtcaaaactacctc 52631245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 2e-60; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 397 - 555
Target Start/End: Original strand, 17527924 - 17528082
Alignment:
Q  397 tgtgtggaaaaatgttgaagaaatttagtaagatggtagagaattgttttagagagatgatgtttgttgtgaatgagagctactgagaaggagtatccgc 496  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  17527924 tgtgtgggaaaatgttgaagaaatttagtaagatggtagagaattgttttagagagatgatgtttgttgtgaatgagagctactgagaaggagtatcggt 17528023  T
Q  497 gnnnnnnnntcaaattgcattacattactggcggatttggtttcaatactgacggattt 555  Q
    |        |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17528024 gaaaaaaaatcaaattgcattacattactggcggatttgatttcaatactgacggattt 17528082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 52 - 223
Target Start/End: Complemental strand, 35046351 - 35046190
Alignment:
Q  52 atgctttgtcaaaactacctcatcattttgtcaaaaccacctctagattactgagggaaaattccgccagtaatatttatgaagaatcacattaccgagg 151  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||          | |    
T  35046351 atgctttgtcaaaactacctcatcattttgtaaaaaccacctctagattattgagggaaaattccgccagtaatatttatggagaat----------aag 35046262  T
Q  152 aaaaattctgttagtaatgcattttccactttttaaatataaataaagaaataaaattaatcaaacacaaat 223  Q
    ||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  35046261 aaaaattctgtcagtaatgcattttccacttatttaatataaataaagaaataaaattaatcaaacacaaat 35046190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 35046351 - 35046413
Alignment:
Q  16 tccgtcagtaattactgagggattattccctcagtaatgctttgtcaaaactacctcatcatt 78  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||    
T  35046351 tccgtcagtaattactgagggattattccctcagtaatgttttgtcaaaactatctcttcatt 35046413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 32243625 - 32243572
Alignment:
Q  78 tttgtcaaaaccacctctagattactgagggaaaattccgccagtaatatttat 131  Q
    ||||||||||| ||||||  |||||||||||||||||||||||||||| |||||    
T  32243625 tttgtcaaaactacctctgcattactgagggaaaattccgccagtaatgtttat 32243572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 17131330 - 17131277
Alignment:
Q  78 tttgtcaaaaccacctctagattactgagggaaaattccgccagtaatatttat 131  Q
    ||||||||||| ||||||  ||||||||||||| |||||||||||||| |||||    
T  17131330 tttgtcaaaactacctctgcattactgagggaatattccgccagtaatgtttat 17131277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 19285178 - 19285134
Alignment:
Q  21 cagtaattactgagggattattccctcagtaatgctttgtcaaaa 65  Q
    ||||||||||||||||| || |||||||||||||||| |||||||    
T  19285178 cagtaattactgagggaataatccctcagtaatgcttcgtcaaaa 19285134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 72
Target Start/End: Complemental strand, 17131344 - 17131314
Alignment:
Q  42 tccctcagtaatgctttgtcaaaactacctc 72  Q
    |||||||||||||||||||||||||||||||    
T  17131344 tccctcagtaatgctttgtcaaaactacctc 17131314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 72
Target Start/End: Complemental strand, 32243639 - 32243609
Alignment:
Q  42 tccctcagtaatgctttgtcaaaactacctc 72  Q
    |||||||||||||||||||||||||||||||    
T  32243639 tccctcagtaatgctttgtcaaaactacctc 32243609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 11305221 - 11305262
Alignment:
Q  31 tgagggattattccctcagtaatgctttgtcaaaactacctc 72  Q
    |||| ||||||||||||||||||||||||||| ||| |||||    
T  11305221 tgagagattattccctcagtaatgctttgtcataaccacctc 11305262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 17131211 - 17131162
Alignment:
Q  174 tttccactttttaaatataaataaagaaataaaattaatcaaacacaaat 223  Q
    |||||||||||||| | ||| ||||||||||||||| || ||||||||||    
T  17131211 tttccactttttaattttaattaaagaaataaaatttattaaacacaaat 17131162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 32243508 - 32243459
Alignment:
Q  174 tttccactttttaaatataaataaagaaataaaattaatcaaacacaaat 223  Q
    |||||||||||||| | ||| ||||||||||||||| || ||||||||||    
T  32243508 tttccactttttaattttaattaaagaaataaaatttattaaacacaaat 32243459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 111; Significance: 9e-56; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 397 - 555
Target Start/End: Complemental strand, 7737 - 7580
Alignment:
Q  397 tgtgtggaaaaatgttgaagaaatttagtaagatggtagagaattgttttagagagatgatgtttgttgtgaatgagagctactgagaaggagtatccgc 496  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  7737 tgtgtggaaaaatgttgaagaaatttagtaagatggtaaagaattgttttagagagatgatgtttgttgtgaatgagagctactgagaaggagtat-cac 7639  T
Q  497 gnnnnnnnntcaaattgcattacattactggcggatttggtttcaatactgacggattt 555  Q
             |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7638 tggaaaaaatcaaattgcattacattactggcggatttgatttcaatactgacggattt 7580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 397 - 555
Target Start/End: Original strand, 31392766 - 31392925
Alignment:
Q  397 tgtgtggaaaaatgttgaagaaatttagtaagatggtagagaattgttttagaga--gatgatgtttgttgtgaatgaga-gctactgagaaggagtatc 493  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||   |||||||||| ||||||||||| ||||||||||| |||||||    
T  31392766 tgtgtggaaaaatgttgaagaaatttaataacatggtagagaattgtttgagagatgaatgatgtttgctgtgaatgagaggctactgagaaagagtatc 31392865  T
Q  494 cgcgnnnnnnnntcaaattgcattacattactggcggatttggtttcaatactgacggattt 555  Q
     | |        |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31392866 ggtg--aaaaaatcaaattgcattacattactggcggatttggtttaaatactgacggattt 31392925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 32093253 - 32093296
Alignment:
Q  19 gtcagtaattactgagggattattccctcagtaatgctttgtca 62  Q
    ||||||||||||||| ||| || |||||||||||||||||||||    
T  32093253 gtcagtaattactgaaggagtaatccctcagtaatgctttgtca 32093296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 397 - 481
Target Start/End: Complemental strand, 37440922 - 37440838
Alignment:
Q  397 tgtgtggaaaaatgttgaagaaatttagtaagatggtagagaattgttttagagagatgatgtttgttgtgaatgagagctactg 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  37440922 tgtgtggaaaaatgttgaagaaatttagtaagatggtagagaattgtttttgagagatgatgtttgttgtgaattagagctactg 37440838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 27408219 - 27408266
Alignment:
Q  78 tttgtcaaaaccacctctagattactgagggaaaattccgccagtaat 125  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||    
T  27408219 tttgtcaaaaccacctttacattactgagggaaaattccgccagtaat 27408266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 27408175 - 27408124
Alignment:
Q  15 ttccgtcagtaattactgagggattattccctcagtaatgctttgtcaaaac 66  Q
    ||||| ||||||||||||||||| || |||||||||||| ||||||||||||    
T  27408175 ttccgccagtaattactgagggaataatccctcagtaatactttgtcaaaac 27408124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 20007762 - 20007714
Alignment:
Q  77 ttttgtcaaaaccacctctagattactgagggaaaattccgccagtaat 125  Q
    |||||||||||||||||||  ||||||||| |||| |||| ||||||||    
T  20007762 ttttgtcaaaaccacctcttcattactgagagaaatttccaccagtaat 20007714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 397 - 555
Target Start/End: Complemental strand, 41073949 - 41073790
Alignment:
Q  397 tgtgtggaaaaatgttgaagaaatttagtaagatggtagagaattgttttagaga--gatgatgtttgttgtgaatgaga-gctactgagaaggagtatc 493  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||   |||||||||| ||||||||||| ||||||||||| |||||||    
T  41073949 tgtgtggaaaaatgttgaagaaatttaataacatggtagagaattgtttgagagatgaatgatgtttgctgtgaatgagaggctactgagaaagagtatc 41073850  T
Q  494 cgcgnnnnnnnntcaaattgcattacattactggcggatttggtttcaatactgacggattt 555  Q
     | |        | | |||||||||||||||||||||||||||||| |||||||||||||||    
T  41073849 ggtg--aaaaaataagattgcattacattactggcggatttggtttaaatactgacggattt 41073790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 35085287 - 35085352
Alignment:
Q  13 tattccgtcagtaattactgagggattattccctcagtaatgctttgtcaaaactacctcatcatt 78  Q
    ||||||||||||||||||||||||| || |||||||||||||| |||||||||| ||||| |||||    
T  35085287 tattccgtcagtaattactgagggaataatccctcagtaatgcattgtcaaaaccacctcttcatt 35085352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 35085331 - 35085382
Alignment:
Q  79 ttgtcaaaaccacctctagattactgagggaaaattccgccagtaatattta 130  Q
    |||||||||||||||||  ||||| ||||||||||||||| |||||| ||||    
T  35085331 ttgtcaaaaccacctcttcattaccgagggaaaattccgctagtaatgttta 35085382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 35085314 - 35085270
Alignment:
Q  13 tattccgtcagtaattactgagggattattccctcagtaatgctt 57  Q
    |||||| |||||||||||||| ||| || ||||||||||||||||    
T  35085314 tattccctcagtaattactgacggaataatccctcagtaatgctt 35085270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 63243 - 63296
Alignment:
Q  78 tttgtcaaaaccacctctagattactgagggaaaattccgccagtaatatttat 131  Q
    ||||||||||| ||||||  |||||||||||||||||||||||||||| |||||    
T  63243 tttgtcaaaactacctctgcattactgagggaaaattccgccagtaatgtttat 63296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 72
Target Start/End: Original strand, 63229 - 63259
Alignment:
Q  42 tccctcagtaatgctttgtcaaaactacctc 72  Q
    |||||||||||||||||||||||||||||||    
T  63229 tccctcagtaatgctttgtcaaaactacctc 63259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 63360 - 63409
Alignment:
Q  174 tttccactttttaaatataaataaagaaataaaattaatcaaacacaaat 223  Q
    |||||||||||||| | ||| ||||||||||||||| || ||||||||||    
T  63360 tttccactttttaattttaattaaagaaataaaatttattaaacacaaat 63409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 35819324 - 35819271
Alignment:
Q  78 tttgtcaaaaccacctctagattactgagggaaaattccgccagtaatatttat 131  Q
    ||||||||||| ||||||  |||||||||||||||||||||||||||| |||||    
T  35819324 tttgtcaaaactacctctgcattactgagggaaaattccgccagtaatgtttat 35819271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 37707306 - 37707258
Alignment:
Q  77 ttttgtcaaaaccacctctagattactgagggaaaattccgccagtaat 125  Q
    |||||||||||||||||||  |||||||| |||||||||||||||||||    
T  37707306 ttttgtcaaaaccacctcttcattactgatggaaaattccgccagtaat 37707258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 26247007 - 26246956
Alignment:
Q  21 cagtaattactgagggattattccctcagtaatgctttgtcaaaactacctc 72  Q
    ||||||||||||| ||| || ||| |||||||||||||||||||||||||||    
T  26247007 cagtaattactgaaggaataatccatcagtaatgctttgtcaaaactacctc 26246956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 27873826 - 27873877
Alignment:
Q  20 tcagtaattactgagggattattccctcagtaatgctttgtcaaaactacct 71  Q
    |||||||||||||||||| || ||| ||||||||||||||||| ||||||||    
T  27873826 tcagtaattactgagggaataatccatcagtaatgctttgtcagaactacct 27873877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 29914676 - 29914723
Alignment:
Q  78 tttgtcaaaaccacctctagattactgagggaaaattccgccagtaat 125  Q
    |||||||||||||||| || |||||||||| |||||||||||||||||    
T  29914676 tttgtcaaaaccacctttacattactgaggaaaaattccgccagtaat 29914723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 21493811 - 21493765
Alignment:
Q  78 tttgtcaaaaccacctctagattactgagggaaaattccgccagtaa 124  Q
    ||||||||||| ||||||  |||||||||||||||||||||||||||    
T  21493811 tttgtcaaaactacctctccattactgagggaaaattccgccagtaa 21493765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 72
Target Start/End: Complemental strand, 21493825 - 21493795
Alignment:
Q  42 tccctcagtaatgctttgtcaaaactacctc 72  Q
    |||||||||||||||||||||||||||||||    
T  21493825 tccctcagtaatgctttgtcaaaactacctc 21493795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 26246972 - 26246926
Alignment:
Q  78 tttgtcaaaaccacctctagattactgagggaaaattccgccagtaa 124  Q
    ||||||||||| ||||||  |||||||||| ||||||||||||||||    
T  26246972 tttgtcaaaactacctctctattactgaggaaaaattccgccagtaa 26246926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 72
Target Start/End: Complemental strand, 35819338 - 35819308
Alignment:
Q  42 tccctcagtaatgctttgtcaaaactacctc 72  Q
    |||||||||||||||||||||||||||||||    
T  35819338 tccctcagtaatgctttgtcaaaactacctc 35819308  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 21493912 - 21493961
Alignment:
Q  174 tttccactttttaaatataaataaagaaataaaattaatcaaacacaaat 223  Q
    |||||||||||||| | ||| ||||||||||||||| || ||||||||||    
T  21493912 tttccactttttaattttaattaaagaaataaaatttattaaacacaaat 21493961  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 4896603 - 4896559
Alignment:
Q  179 actttttaaatataaataaagaaataaaattaatcaaacacaaat 223  Q
    ||||||||| | ||| |||||||||||||||||| ||||||||||    
T  4896603 actttttaattttaattaaagaaataaaattaattaaacacaaat 4896559  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 4896708 - 4896676
Alignment:
Q  98 attactgagggaaaattccgccagtaatattta 130  Q
    |||||||||||||||||||||||||||| ||||    
T  4896708 attactgagggaaaattccgccagtaatgttta 4896676  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 28989870 - 28989815
Alignment:
Q  16 tccgtcagtaattactgagggattattccctcagtaatgctttgtcaaaactacct 71  Q
    |||||||||||||||||  ||| || |||||||||||| |||||||||||||||||    
T  28989870 tccgtcagtaattactggcggaataatccctcagtaatcctttgtcaaaactacct 28989815  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 48504201 - 48504158
Alignment:
Q  19 gtcagtaattactgagggattattccctcagtaatgctttgtca 62  Q
    ||||||||||||||||||| || |||||||||||||||||||||    
T  48504201 gtcagtaattactgagggaataatccctcagtaatgctttgtca 48504158  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 19027436 - 19027394
Alignment:
Q  81 gtcaaaaccacctctagattactgagggaaaattccgccagta 123  Q
    |||||||||||||||  ||||||||||||||||||||||||||    
T  19027436 gtcaaaaccacctcttcattactgagggaaaattccgccagta 19027394  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 128
Target Start/End: Original strand, 19027492 - 19027522
Alignment:
Q  98 attactgagggaaaattccgccagtaatatt 128  Q
    |||||||||||||||||||||||||||||||    
T  19027492 attactgagggaaaattccgccagtaatatt 19027522  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 6161742 - 6161795
Alignment:
Q  78 tttgtcaaaaccacctctagattactgagggaaaattccgccagtaatatttat 131  Q
    ||||| ||||| ||||||  ||||||||||||||||||||||| |||| |||||    
T  6161742 tttgtgaaaactacctctgcattactgagggaaaattccgccaataatgtttat 6161795  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 12156545 - 12156504
Alignment:
Q  21 cagtaattactgagggattattccctcagtaatgctttgtca 62  Q
    ||||||||| ||||||| || |||||||||||||||||||||    
T  12156545 cagtaattattgagggaataatccctcagtaatgctttgtca 12156504  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 34972736 - 34972776
Alignment:
Q  14 attccgtcagtaattactgagggattattccctcagtaatg 54  Q
    ||||||| |||||||||||||||| || |||||||||||||    
T  34972736 attccgtaagtaattactgagggaataatccctcagtaatg 34972776  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 294898 - 294946
Alignment:
Q  23 gtaattactgagggattattccctcagtaatgctttgtcaaaactacct 71  Q
    |||||||| |||||| || ||||||||||||||||||||| ||||||||    
T  294898 gtaattacggagggaataatccctcagtaatgctttgtcagaactacct 294946  T

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