View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_high_16 (Length: 515)
Name: NF13006_high_16
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Original strand, 30994502 - 30994997
Alignment:
| Q |
18 |
caagtgtcttccattgctagcgaaaacccaaccacgcggggtatgagttgtttgaccaggccatatgacaccatataattcttttcttaaatttgaatga |
117 |
Q |
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| T |
30994502 |
caagcgtcttccattgctagcgaaaacccaaccacgcggggtatgagttgtttgaccaggccatatgacaccatataatccttttcttaaatttgaatga |
30994601 |
T |
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| Q |
118 |
ttaggagattccacaccagtgtggagtccataagattcagaccaaaaaccaatccttctaattccactacctatgacattaatgatttcatatgatggat |
217 |
Q |
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| T |
30994602 |
ttaggagattccacaccagtgtggagtccataagattcagaccaaaaaccaatccttctaattccactacctatgacattaatgatttcatatgatggat |
30994701 |
T |
|
| Q |
218 |
tcattaagtttccatttggatcaaacataatattgcctgttaaaccagttatgttgacctctaagattttttgaagcaacatactaccattaacaaagac |
317 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30994702 |
tcattaagtttccatttgaatcaaacataatattgcctgttaaaccagttatgttgacctctaagattttttgaagcaacatactaccattaacaaagac |
30994801 |
T |
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| Q |
318 |
ctttatattatccaaatgaagggtgtctcctcttaacatgtttagatttgaatcatttgaaaatgacaaagttcctccactgttaaaaaatgcatctagt |
417 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30994802 |
cttcatattatccaaatgaagggtgtctcctcttaacatgtttagatttgaatcatttgaaaatgacaaagttcctccactgttaaaaaatgcatctagt |
30994901 |
T |
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| Q |
418 |
gcagaagcaagaacataaacagtgtcataggcgtataaaccaaacatgtttaaaccaaaagaaggaccatgattatggtcatgatcagaacctatg |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30994902 |
gcagaagcaagaacataaacagtgtcataggcgtataaaccaaacatgtttaaaccaaaagaaggcccatgattatggtcatgatcagaacctatg |
30994997 |
T |
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