View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_high_18 (Length: 470)
Name: NF13006_high_18
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_high_18 |
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| [»] scaffold0204 (3 HSPs) |
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Alignment Details
Target: scaffold0204 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 25 - 252
Target Start/End: Original strand, 18096 - 18307
Alignment:
| Q |
25 |
gggtcttcccctacgggtggtggtactgtagataagggaagagctgagcaatataaaggaagggtcactgttcatgttatcattgcttgcattgttgctg |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18096 |
gggtcttcccctacgggtggtggtactgtagataagggaagagctgagcaatataaaggaagggtcactgttcatgttatcattgcttgcattgttgctg |
18195 |
T |
|
| Q |
125 |
ctactggtgggtccctttttggctatgatgttggtatttcaggttctgtcttaatcccttcactctcaaaacttcttcatattgattttatattaacctt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
18196 |
ctactggtgggtccctttttggctatgatgttggtatttcaggttctgtcttaatcccttcactctca----------------attttatattcacctt |
18279 |
T |
|
| Q |
225 |
cactttcaggttattattctggaataaa |
252 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
18280 |
cactttcaggttattattctggaataaa |
18307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 278 - 466
Target Start/End: Original strand, 18321 - 18508
Alignment:
| Q |
278 |
gttaaaaaacttcaacttacttgtgttgtttgtgtttgaaagctgaaaagggaaatacacatgggttgaatctcattttcttgattgttctttcatgtct |
377 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
18321 |
gttaaaaaacttcaact-acttgtgttgtttgtgtttgaaagctgaaaagggaaatacacatgggttgaatctcattttcttgagtgttctttcatgtct |
18419 |
T |
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| Q |
378 |
gtcatattttcaataatctgcacttctctcaactgcttaaagaccttttcctttattctaagatgcaacatcccagctttcttctcact |
466 |
Q |
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| T |
18420 |
gtcatattttcaataatctgcacttctctcaactgcttaaagaccttttcctttattctaagatgcaacttcccagctttcttcgcact |
18508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 5347 - 5431
Alignment:
| Q |
88 |
gtcactgttcatgttatcattgcttgcattgttgctgctactggtgggtccctttttggctatgatgttggtatttcaggttctg |
172 |
Q |
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||||| |||||||| ||| ||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||| |
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| T |
5347 |
gtcacagttcatgtcatccttgcttgcattgttgctgccactggagggtctctatttggctatgatgttggtatttcaggttctg |
5431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 25 - 252
Target Start/End: Original strand, 48330574 - 48330785
Alignment:
| Q |
25 |
gggtcttcccctacgggtggtggtactgtagataagggaagagctgagcaatataaaggaagggtcactgttcatgttatcattgcttgcattgttgctg |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48330574 |
gggtcttcccctacgggtggtggtactgtagataagggaagagctgagcaatataaaggaagggtcactgttcatgttatcattgcttgcattgttgctg |
48330673 |
T |
|
| Q |
125 |
ctactggtgggtccctttttggctatgatgttggtatttcaggttctgtcttaatcccttcactctcaaaacttcttcatattgattttatattaacctt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
48330674 |
ctactggtgggtccctttttggctatgatgttggtatttcaggttctgtcttaatcccttcactctca----------------attttatattcacctt |
48330757 |
T |
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| Q |
225 |
cactttcaggttattattctggaataaa |
252 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
48330758 |
cactttcaggttattattctggaataaa |
48330785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 278 - 466
Target Start/End: Original strand, 48330799 - 48330986
Alignment:
| Q |
278 |
gttaaaaaacttcaacttacttgtgttgtttgtgtttgaaagctgaaaagggaaatacacatgggttgaatctcattttcttgattgttctttcatgtct |
377 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48330799 |
gttaaaaaacttcaact-acttgtgttgtttgtgtttgaaagctgaaaagggaaatacacatgggttgaatctcattttcttgagtgttctttcatgtct |
48330897 |
T |
|
| Q |
378 |
gtcatattttcaataatctgcacttctctcaactgcttaaagaccttttcctttattctaagatgcaacatcccagctttcttctcact |
466 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
48330898 |
gtcatattttcaataatctgcacttctctcaactgcttaaagaccttttcctttattctaagatgcaacttcccagctttcttcgcact |
48330986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 40 - 199
Target Start/End: Original strand, 48342455 - 48342616
Alignment:
| Q |
40 |
ggtggtggtactgtagataag---ggaagagctgagcaatataaaggaagggtcactgttcatgttatcattgcttgcattgttgctgctactggtgggt |
136 |
Q |
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|||||||||||||| |||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48342455 |
ggtggtggtactgtggataagaacggaagggcagagcaatataagggaagggtcactgttcatgttatcattgcttgcattgttgctgctactggtgggt |
48342554 |
T |
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| Q |
137 |
ccctttttggctatgatgttggtatttcaggttctgtcttaatcccttcactctcaaaacttc |
199 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
48342555 |
ccctttttggctatgacgttggtatttcaggtt-tgtcttaatcccttcactctcaaaacttc |
48342616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 48342721 - 48342757
Alignment:
| Q |
312 |
tttgaaagctgaaaagggaaatacacatgggttgaat |
348 |
Q |
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| T |
48342721 |
tttgaaagctgaaaagggaaatacatatgagttgaat |
48342757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 76 - 170
Target Start/End: Complemental strand, 41416562 - 41416468
Alignment:
| Q |
76 |
tataaaggaagggtcactgttcatgttatcattgcttgcattgttgctgctactggtgggtccctttttggctatgatgttggtatttcaggttc |
170 |
Q |
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|||||||| ||||||||| ||||||||||||| ||||||||||||||||| || || || |||||||||||||||||||| ||||||||||| |
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| T |
41416562 |
tataaagggagggtcactccctatgttatcattgcatgcattgttgctgctacaggaggatcactttttggctatgatgttggaatttcaggttc |
41416468 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 36296889 - 36296816
Alignment:
| Q |
98 |
atgttatcattgcttgcattgttgctgctactggtgggtccctttttggctatgatgttggtatttcaggttct |
171 |
Q |
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||||||||||||||||||||||||| ||||| || || || |||||||||||||||||||| |||||||||||| |
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| T |
36296889 |
atgttatcattgcttgcattgttgcagctacagggggatcactttttggctatgatgttggaatttcaggttct |
36296816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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