View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_high_2 (Length: 832)
Name: NF13006_high_2
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 687; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 50 - 809
Target Start/End: Complemental strand, 46498732 - 46497971
Alignment:
| Q |
50 |
ggcctaggccttgaattttctcatcaagctagactctagtcttacaaagtcgatatcggctcagcgtatttccactcctaattagggagcgttagtcact |
149 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
46498732 |
ggcctaggccttgaattttctcatcaagctagactctagtcttacaaagtcgatatcggctcagcgtatttccactcctaattagggagggttagtcact |
46498633 |
T |
|
| Q |
150 |
tttgtcatccctactcctaattatcatttgatgagagatatcactatctttttcatggtatatcatcaattttaaaatatccttacaaaaatggttgatg |
249 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46498632 |
tttgtcatccctactcctaattattatttgatgagagatatcactatctttttcatggtatatcatcaattttaaaatatccttacaaaagtggttgatg |
46498533 |
T |
|
| Q |
250 |
ttgcaagatattatattttcattagatattaagctaattccatacgtatactatgtattatcc---tttaagtcattatataagactgcaaaatatattt |
346 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
46498532 |
ttgcaagatattatattttcattggatattaagccaattccatacgtatactatgtattatccccttttaagtcattatataagactgcaaaatatattt |
46498433 |
T |
|
| Q |
347 |
tataattgaactacacttcatgattataaactatgaaatacaaattaaaattaatattggttcaagtgttaatatccctagcttcgttcctttcaatcct |
446 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46498432 |
tataattgaactacacctcatgattataaactatgaaatacaaattaaaattaatattggttcaagtgttaatatccctagcttcgttcctttcaatcct |
46498333 |
T |
|
| Q |
447 |
ttgggtagttatgttacccgtatatacgaacatcattctggcacatgggctgaacatagtggaacgaatgagttagactgctcctaacaatattgtacga |
546 |
Q |
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| T |
46498332 |
atgggtagttatgttatccgtatatacgaacatcattctggcacatgggctgaacatagtggaacgaatgagttagactgctcctaacaatattgtacga |
46498233 |
T |
|
| Q |
547 |
aactttgaacacaaataatatgtaaaacttaccttcaattgcaaatagcactcttgtttaaattaaaataaaatgtctgaaatcgtatatttcataggat |
646 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46498232 |
aactttgaacacaaataatatgtaaaactcaccttcaattgcaaatagcactcttgtttaaattaaaataaaatgtctgaaatcgtatatttcataggat |
46498133 |
T |
|
| Q |
647 |
gctaaaaacaaaagagtatatgattttgaaatagaaaatnnnnnnnggaaagagagagagcatcgaattctctgaggttgcaataaaaatggttggttgc |
746 |
Q |
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| T |
46498132 |
gctaaaaacaaaagagtatatgattttgaaatagaaaat-aaaaaaggaaagagagagagcatcgaattctctgaggttgcaataaaaatggttggttgc |
46498034 |
T |
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| Q |
747 |
tttccaacttcagtcttctagtacaagctacactccaacccacaccttttcttcatattcttc |
809 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46498033 |
tttccaacttcagtcttctagtacaagctacactccaacccacaccttttcttcatattcttc |
46497971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 46498838 - 46498730
Alignment:
| Q |
1 |
aggtcatacacaagtataaaaataaatctatataacaggctacaaatgtggcctaggccttgaattttctcatcaagctagactctagtcttacaaagtc |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46498838 |
aggtcatacactagtataaaaataaatctatataacaggctacaaatgtggcctaggccttgaattttctcatcaagctagactctagtcttacaaagtc |
46498739 |
T |
|
| Q |
101 |
gatatcggc |
109 |
Q |
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||||||||| |
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| T |
46498738 |
gatatcggc |
46498730 |
T |
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Back To:
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