View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13006_high_20 (Length: 452)

Name: NF13006_high_20
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13006_high_20
NF13006_high_20
[»] chr1 (5 HSPs)
chr1 (11-435)||(29449237-29449653)
chr1 (17-209)||(29462304-29462490)
chr1 (212-280)||(29462215-29462283)
chr1 (237-311)||(29444247-29444321)
chr1 (237-311)||(29454254-29454328)
[»] chr2 (6 HSPs)
chr2 (17-311)||(9363451-9363762)
chr2 (237-311)||(12019793-12019867)
chr2 (237-311)||(11988326-11988400)
chr2 (237-307)||(12007150-12007220)
chr2 (164-212)||(9069069-9069117)
chr2 (215-315)||(9287782-9287882)
[»] chr8 (1 HSPs)
chr8 (215-311)||(41968300-41968397)
[»] chr7 (1 HSPs)
chr7 (248-312)||(45242651-45242715)


Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 11 - 435
Target Start/End: Complemental strand, 29449653 - 29449237
Alignment:
Q  11 cacagatgagatctttgtcacacttctgttggccttttctttcaccaaaggtcatccccattcacaattccatggggaatggatcccctcgtgtgagatt 110  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29449653 cacagatgagatctttgtcacacttctattggccttttctttcaccaaaggtcatccccattcacaattccacggggaatggatcccctcgtgtgagatt 29449554  T
Q  111 tttacacaagagagaagtgtgatatatgtcacaccattccagaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaac 210  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449553 tttacacaagagagaagtgtgat----gtcacaccattccagaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaac 29449458  T
Q  211 cactagaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449457 cactagaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatc 29449358  T
Q  311 cttgtnnnnnnnncacatgaatatcatataagtaaactcaacaaattagctagtcacgtgcatgggccgaatgtccatgtatcattgctcttatcaataa 410  Q
    |||||        |||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||    
T  29449357 cttgtaaaaaaaacacatgaatatcatataagtaaactcaacaaattagctagtca----catgggccgaatgtccatgtatcattgctcttatcaataa 29449262  T
Q  411 taacctgccacgtcatgtacctatt 435  Q
    |||||||||||||||||||||||||    
T  29449261 taacctgccacgtcatgtacctatt 29449237  T

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Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 29462490 - 29462304
Alignment:
Q  17 tgagatctttgtcacacttctgttggccttttctttcaccaaaggtcatccccattcacaattccatggggaatggatcccctcgtgtgagatttttaca 116  Q
    ||||||||||||||||||| ||| ||||||| ||||||||| |||||||||||||||| |||||||  || || |||||||||| |||||||||||||||    
T  29462490 tgagatctttgtcacacttttgtaggccttt-ctttcaccataggtcatccccattcataattccaccggaaacggatcccctcatgtgagatttttaca 29462392  T
Q  117 caagagagaagtgtgatatatgtcacaccattccagaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaa 209  Q
    | |||||||||| ||    |||||| |||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29462391 cgagagagaagt-tg----atgtcataccatttcagaagagagatacaaatgtgtggagctacattccttatcaattcaatccttcccacaaa 29462304  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 29462283 - 29462215
Alignment:
Q  212 actagaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgt 280  Q
    ||||||||||| ||||||||| | |||| ||| ||||||| |||||||||||||| |||||||||||||    
T  29462283 actagaaacaacttgagcatttggtttctgctacacatcattggttcttctttcattcccttacaatgt 29462215  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 311
Target Start/End: Complemental strand, 29444321 - 29444247
Alignment:
Q  237 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 311  Q
    ||||||| | |||||  |||||||| |||||||||||||||| ||  ||||||||||||| ||||||||| ||||    
T  29444321 ttcagctacgcatcaaaggttcttccttcactcccttacaatttcagtttaaatccttgggacaagaagttatcc 29444247  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 311
Target Start/End: Complemental strand, 29454328 - 29454254
Alignment:
Q  237 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 311  Q
    ||||||| |||||||  | |||||| |||||||| ||||||| || ||||||||||| || ||||||||||||||    
T  29454328 ttcagctacacatcaaagattcttccttcactccattacaatttcaatttaaatcctcgggacaagaagtcatcc 29454254  T

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Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 9363451 - 9363762
Alignment:
Q  17 tgagatctttgtcacacttctgttggccttttctttcaccaaaggtcatccccattcacaattccatg-----gggaatggatcccctcgtgtgagattt 111  Q
    ||||||||||||  |||||| || ||||||| ||| ||||| ||||||||||||||||| |||| ||      |||||||||||||||| ||||||||||    
T  9363451 tgagatctttgtggcacttcagtaggccttt-cttccaccataggtcatccccattcacgattcgattccaccgggaatggatcccctcatgtgagattt 9363549  T
Q  112 ttacacaagagagaagtgtgatatatgtcacaccattccagaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaacc 211  Q
    ||  ||| ||||||||||||     |||||||||| || ||||| ||||||||||||| ||||||||||||||||||||||||||  |||||| | ||||    
T  9363550 tt--acatgagagaagtgtg----gtgtcacaccactcaagaagagagatacaaatggatggagctacattccttatcaattcaactcttcccgctaacc 9363643  T
Q  212 a-------------------ctagaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatcc 292  Q
    |                    ||||||||| ||||| || ||  ||||||| ||||||  |||||||||| |||||||||||||||| | ||||||||||    
T  9363644 aaggtgactcattccgtcgcttagaaacaacttgagtatccggcttcagctacacatccctggttcttctatcactcccttacaatgacaatttaaatcc 9363743  T
Q  293 ttggtacaagaagtcatcc 311  Q
    |||| ||||||||||||||    
T  9363744 ttgggacaagaagtcatcc 9363762  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 311
Target Start/End: Complemental strand, 12019867 - 12019793
Alignment:
Q  237 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 311  Q
    ||||||| |||||||  | |||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  12019867 ttcagctacacatcaacgattcttccttcactcccttacaatgtcaatttaaatcctttggacaagaagtcatcc 12019793  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 237 - 311
Target Start/End: Complemental strand, 11988400 - 11988326
Alignment:
Q  237 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 311  Q
    ||||||| |||| ||  |||||||| ||||||||||||||||||| ||||||||||||   ||||||||||||||    
T  11988400 ttcagctacacaacaaaggttcttccttcactcccttacaatgtcaatttaaatccttttgacaagaagtcatcc 11988326  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 307
Target Start/End: Complemental strand, 12007220 - 12007150
Alignment:
Q  237 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtc 307  Q
    ||||||| ||||| |  |||||||| ||||||||||||||| ||| ||||||||||| || ||| ||||||    
T  12007220 ttcagctacacataacaggttcttccttcactcccttacaaggtcaatttaaatcctcgggacaggaagtc 12007150  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 9069117 - 9069069
Alignment:
Q  164 aaatgggtggagctacattccttatcaattcaatccttcccacaaacca 212  Q
    ||||||||| |||| ||||| |||||||||||| | |||||||||||||    
T  9069117 aaatgggtgcagcttcattctttatcaattcaacctttcccacaaacca 9069069  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 315
Target Start/End: Original strand, 9287782 - 9287882
Alignment:
Q  215 agaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatccttg 314  Q
    |||||||| |||||||| |  |||||||| |||||||  ||| ||||  ||  ||||||||||| || ||||||||||| || |||| ||||| ||||||    
T  9287782 agaaacaacttgagcatcctgtttcagctgcacatcacaggtacttccatccatcccttacaatctcaatttaaatcctcgggacaaaaagtcgtccttg 9287881  T
Q  315 t 315  Q
    |    
T  9287882 t 9287882  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 311
Target Start/End: Complemental strand, 41968397 - 41968300
Alignment:
Q  215 agaaacaatttgagcattc-gttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 311  Q
    |||||||| |||||||| | | |||||||| |||||||  ||| |||| |||  ||||||||||| || |||||||||||||| ||||||||||||||    
T  41968397 agaaacaacttgagcatcctggtttcagctgcacatcacaggtccttccttccatcccttacaatctcaatttaaatccttgggacaagaagtcatcc 41968300  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 45242651 - 45242715
Alignment:
Q  248 atcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcct 312  Q
    |||| ||||||||| ||  ||| ||| ||||||| |||||||||| ||| |||||||||||||||    
T  45242651 atcactggttcttccttggctctctttcaatgtcaatttaaatccctggaacaagaagtcatcct 45242715  T

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