View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13006_high_29 (Length: 375)

Name: NF13006_high_29
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13006_high_29
NF13006_high_29
[»] scaffold1194 (1 HSPs)
scaffold1194 (1-281)||(6-286)
[»] chr8 (7 HSPs)
chr8 (1-281)||(16529176-16529460)
chr8 (1-166)||(16589302-16589468)
chr8 (280-370)||(16570480-16570570)
chr8 (192-281)||(16570605-16570694)
chr8 (50-143)||(16520803-16520896)
chr8 (299-370)||(16529058-16529129)
chr8 (40-166)||(26370706-26370832)
[»] chr3 (3 HSPs)
chr3 (40-166)||(2606513-2606639)
chr3 (50-165)||(2621145-2621260)
chr3 (43-140)||(39160881-39160978)


Alignment Details
Target: scaffold1194 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 286 - 6
Alignment:
Q  1 tttctttaagttatgttgtgggaattctctcataattattgatgtttacttgatttcagcgtcattttcaacacattatttggccttagtacgggttttt 100  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  286 tttctttaagttatgttgtgggatgtctctcataattattgatgtttacttgatttcagtgtcattttcaacacattatttggcctcagtacgggttttt 187  T
Q  101 ggatggctattatcacgagatttcttctcggaagtttaaatggcgtgcttggaccgattaaggtacgcgtgagagtattctaatcctattctattgttcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  186 ggatggctattatcacgagatttcttctcggaagtttaaatggcgtgcttggaccagttaaggtacgcgtgagagtattctaatcctattctattgttcc 87  T
Q  201 taatcctgattaatattgtactgctaatatattcgttaattacttaaggctttcggatatctgttaaaacagattacctaa 281  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||    
T  86 taatccttactaatattgtactgctaatatattcgttaattacttaaggctttcggttatctgttaaaactaattacctaa 6  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 16529460 - 16529176
Alignment:
Q  1 tttctttaagttatgttgtgggaattctctcataattattgatgtttacttgatttcagcgtcattttcaacacattatttggccttagtacgggttttt 100  Q
    ||||||||| | ||||| || || ||| |||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  16529460 tttctttaaatcatgttttgtgatttcgctcataatcattgatgttaacttgatttcagtgtcattttcaacacattatttggccttagtacgggttatt 16529361  T
Q  101 ggatggctattatcacgagatttcttctcggaagtttaaatggcgtgcttggaccgattaaggtac--gcgtg--agagtattctaatcctattctattg 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||  |||||  ||||||||||| |||||||||||||    
T  16529360 ggatggctattatcacgagatttcttctcggaagtttaaatggcgtgcttgggccagttaaggtacgtgcgtgtcagagtattctactcctattctattg 16529261  T
Q  197 ttcctaatcctgattaatattgtactgctaatatattcgttaattacttaaggctttcggatatctgttaaaacagattacctaa 281  Q
    |||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||| | ||||||||||||||||||||||    
T  16529260 ttcctaatcctgattactattgtactgctaatatattggttagttacttaaggctttcggttttctgttaaaacagattacctaa 16529176  T

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Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 16589468 - 16589302
Alignment:
Q  1 tttctttaagttatgttgtgggaattctctcataattattgatgttt-acttgatttcagcgtcattttcaacacattatttggccttagtacgggtttt 99  Q
    |||||||||||||||||||| || ||||| || |||| || |||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  16589468 tttctttaagttatgttgtgtgatttctcccacaattgttcatgttttacttgatttcagtgtcattttcaacacattattcggccttagtacgggtttt 16589369  T
Q  100 tggatggctattatcacgagatttcttctcggaagtttaaatggcgtgcttggaccgattaaggtac 166  Q
    ||||||||||||  ||| ||||||||||||||| ||||||||||||||||||||||  |||||||||    
T  16589368 tggatggctattgccaccagatttcttctcggaggtttaaatggcgtgcttggaccagttaaggtac 16589302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 280 - 370
Target Start/End: Complemental strand, 16570570 - 16570480
Alignment:
Q  280 aaatttgtatccattactagttcaatcttattcaaattttagtttatgtatgtatatgaaatatttctgtatttaacaggcctatgcttct 370  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16570570 aaatttgtatccattacttgttcaatcttattcaaattttaatttatttatgtatatgaaatatttctgtatttaacaggcctatgcttct 16570480  T

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Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 192 - 281
Target Start/End: Complemental strand, 16570694 - 16570605
Alignment:
Q  192 tattgttcctaatcctgattaatattgtactgctaatatattcgttaattacttaaggctttcggatatctgttaaaacagattacctaa 281  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||    
T  16570694 tattgttcctaatccttactaatattgtactgctaatatattcgttaattacttaaggctttcggttatctgttaaaactaattacctaa 16570605  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 16520896 - 16520803
Alignment:
Q  50 ttgatttcagcgtcattttcaacacattatttggccttagtacgggtttttggatggctattatcacgagatttcttctcggaagtttaaatgg 143  Q
    |||||||||| ||| || |||||||| | ||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||| |||||||||    
T  16520896 ttgatttcagtgtcgttctcaacacactttttggccttagtacgagtttttggatggctgttatcacaagatttcttttgggaactttaaatgg 16520803  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 16529129 - 16529058
Alignment:
Q  299 gttcaatcttattcaaattttagtttatgtatgtatatgaaatatttctgtatttaacaggcctatgcttct 370  Q
    |||||||||||||||||||| | |||| |  ||||||||||||| |||||||||||||||||||||||||||    
T  16529129 gttcaatcttattcaaatttcaatttaggcgtgtatatgaaatacttctgtatttaacaggcctatgcttct 16529058  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 40 - 166
Target Start/End: Complemental strand, 26370832 - 26370706
Alignment:
Q  40 tgatgtttacttgatttcagcgtcattttcaacacattatttggccttagtacgggtttttggatggctattatcacgagatttcttctcggaagtttaa 139  Q
    ||||| |||||| |||||||  |||||||||||||| ||||||||||||| ||  |||||||||||||| |||  ||  | ||| |||| ||||||||||    
T  26370832 tgatgattactttatttcagtatcattttcaacacactatttggccttagcacaagtttttggatggctgttacaacacggttttttcttggaagtttaa 26370733  T
Q  140 atggcgtgcttggaccgattaaggtac 166  Q
    ||||  |||||||||| || |||||||    
T  26370732 atggtttgcttggaccaatgaaggtac 26370706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 166
Target Start/End: Original strand, 2606513 - 2606639
Alignment:
Q  40 tgatgtttacttgatttcagcgtcattttcaacacattatttggccttagtacgggtttttggatggctattatcacgagatttcttctcggaagtttaa 139  Q
    ||||| ||||||||||||||  |||| ||||||||| ||||||||||||| ||| |||||||||||||| |||  ||| | ||| |||| ||| ||||||    
T  2606513 tgatgattacttgatttcagtatcatcttcaacacactatttggccttagcacgagtttttggatggctgttacaacgcggttttttcttggatgtttaa 2606612  T
Q  140 atggcgtgcttggaccgattaaggtac 166  Q
    ||||  |||||||||| || |||||||    
T  2606613 atggtttgcttggaccaatgaaggtac 2606639  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 2621145 - 2621260
Alignment:
Q  50 ttgatttcagcgtcattttcaacacattatttggccttagtacgggtttttggatggctattatcacgagatttcttctcggaagtttaaatggcgtgct 149  Q
    ||||||||||  | |||||||||||| ||||||||||| | ||  |||||||||||||| |||  | ||||||  |||| ||| ||||||||||  ||||    
T  2621145 ttgatttcagtataattttcaacacactatttggcctttgcacaagtttttggatggctgttacgatgagattcgttcttggaggtttaaatggtttgct 2621244  T
Q  150 tggaccgattaaggta 165  Q
    |||||| || ||||||    
T  2621245 tggaccaatgaaggta 2621260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 39160881 - 39160978
Alignment:
Q  43 tgtttacttgatttcagcgtcattttcaacacattatttggccttagtacgggtttttggatggctattatcacgagatttcttctcggaagtttaaa 140  Q
    ||||| ||||||||||| |||||||||||||| || ||||| ||||| ||   | | |||||||||||   || |||||||||||| |||||||||||    
T  39160881 tgtttgcttgatttcagtgtcattttcaacacgttttttggtcttagcacaaatctatggatggctatcggcatgagatttcttcttggaagtttaaa 39160978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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