View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_high_31 (Length: 362)
Name: NF13006_high_31
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 174 - 357
Target Start/End: Original strand, 35282618 - 35282801
Alignment:
| Q |
174 |
caatcatgtatgtttctaagtttagatcctaatatccaacataatctcataggaatcaccaagtatttctactattctcactattttcccaataatagcc |
273 |
Q |
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| T |
35282618 |
caatcatgtatgtttctaagtttagatcctaatatccaacataatctcatatgaatcaccaagtatttctactattctcactattttcccaataataccc |
35282717 |
T |
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| Q |
274 |
aagaaaagtcttagcagcatccaaactaggaaaccaagtaggttcaagaaaaattctactcaaacattccaaattcatctcact |
357 |
Q |
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| T |
35282718 |
aagaaaagtcttggcagcatccaagctaggaaaccaagtaggttcaagaaaaatcctactcaaacattccaaattcatctcact |
35282801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 35281601 - 35281664
Alignment:
| Q |
16 |
caattgggattagcgtattcaaaatgtcattcaaataacaatctttagtaggttctccaatctt |
79 |
Q |
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| T |
35281601 |
caattgggattagtgtattcaaaatgtcattcaaataacaatctttagtaggttctccaatctt |
35281664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 146
Target Start/End: Original strand, 35282538 - 35282577
Alignment:
| Q |
107 |
attttcttttggtacacctaatacaaaatttaatccacat |
146 |
Q |
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| T |
35282538 |
attttcttttggtacacctaatacaaaatttaatccacat |
35282577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 31472625 - 31472674
Alignment:
| Q |
272 |
ccaagaaaagtcttagcagcatccaaactaggaaaccaagtaggttcaag |
321 |
Q |
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| T |
31472625 |
ccaagaaaagtcttagcagcatccaagctaggaaagtaggtaggttcaag |
31472674 |
T |
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