View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_high_32 (Length: 362)
Name: NF13006_high_32
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 50393035 - 50393264
Alignment:
| Q |
1 |
ttagagggtcgagggatataaccattatttctcttttctctatgaaacnnnnnnn-ctttaaaataaactgggtaacatatcattttttactgaagctnn |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50393035 |
ttagagggtcgagggatataaccattatttctcttttctctatgaaacttttttttctttaaaataaactgggtaacatatcattttttactggagctaa |
50393134 |
T |
|
| Q |
100 |
nnnnnntatgaaagaaaaagactatctcgatcgcaagaggaaattttttaaccccaaatcactgcatagtgagcatatgatgataataggtgtaaaacaa |
199 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50393135 |
aaaaaatatgaaagaaaaagactatctcgatcgaaagaggaaaatttttaaccccaaatcactgcatagtgagcatatgatgataataggtgtaaaacaa |
50393234 |
T |
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| Q |
200 |
tatgaatccctaatgaaagaagttcgatta |
229 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
50393235 |
tatgaatccctaatgaaagaagttcgatta |
50393264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 226 - 340
Target Start/End: Original strand, 50394538 - 50394652
Alignment:
| Q |
226 |
attatagtgtaagaaattggtataatattataaaaattaaaaagcatgactagatacatatgctgcaactgcaagtatgagattagactttagagctcat |
325 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50394538 |
attatagtgtaagaaattggtacaatattataaaaattaaaaagcatgactagatacatatgctgcaactgcaagtatgagattagactttagagctcat |
50394637 |
T |
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| Q |
326 |
gtatttacctagtat |
340 |
Q |
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||||||||||||||| |
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| T |
50394638 |
gtatttacctagtat |
50394652 |
T |
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