View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_high_38 (Length: 339)
Name: NF13006_high_38
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 55978229 - 55978445
Alignment:
| Q |
11 |
caaaggttgattttaagagttatggtgttgacaacactttcaaagagtattctaaagaaggtatttcttttacaaagtacacaaacgcgagtttgagttt |
110 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
55978229 |
caaaggttgattttaagggttatggtgttgacaacactttcaaagagtattctaaagaaggtgtttcttttgcaaagtacacaaacgcgagtttgagttt |
55978328 |
T |
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| Q |
111 |
aagtgcttctatggaaatgaaaaagagcacggtgagtggtagtttggtcaaaacatcggttgaaccgggtaagttttttcgggaaaacatgttgaaagaa |
210 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55978329 |
aaatgcttctatggaaatgaaaaagagcacggtgagtggtagtttggtcaaaacatcggttgaaccgggtaagttttttcgggaaaacatgttgaaagaa |
55978428 |
T |
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| Q |
211 |
ggggtagtaatgcctat |
227 |
Q |
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| T |
55978429 |
gtggtagtaatgcctat |
55978445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 219 - 323
Target Start/End: Original strand, 55980013 - 55980117
Alignment:
| Q |
219 |
aatgcctatgcctgatatcagagataaattacctaaaaggtcgtttttaccccggagtattcttgcgaaattacctttttctacttcaaagattgatgag |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55980013 |
aatgcctatgcctgatatcagagataaattacctaaaaggtcgtttttaccccagagtattcttgcgaaattacctttttctacttcaaagattgatgag |
55980112 |
T |
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| Q |
319 |
atgaa |
323 |
Q |
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||||| |
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| T |
55980113 |
atgaa |
55980117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 11 - 323
Target Start/End: Original strand, 14865902 - 14866214
Alignment:
| Q |
11 |
caaaggttgattttaagagttatggtgttgacaacactttcaaagagtattctaaagaaggtatttcttttacaaagtacacaaacgcgagtttgagttt |
110 |
Q |
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||||||||| |||||| | ||||||||| | || ||||||||||||||| || |||||| |||||||| ||||||||||||||| ||||| |||||| |
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| T |
14865902 |
caaaggttggttttaaaggctatggtgttaaaaatgatttcaaagagtattcgaaggaaggtgtttcttttgcaaagtacacaaacgtgagttcgagttt |
14866001 |
T |
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| Q |
111 |
aagtgcttctatggaaatgaaaaagagcacggtgagtggtagtttggtcaaaacatcggttgaaccgggtaagttttttcgggaaaacatgttgaaagaa |
210 |
Q |
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|||||||||| || || |||| || | | | ||||||||||||||| |||| || |||||| || |||||||||||| | || || |||||||||||| |
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| T |
14866002 |
aagtgcttctgtgaaagtgaacaaaaatgctgcgagtggtagtttggtaaaaaaatgggttgagcctggtaagttttttagagagaaaatgttgaaagaa |
14866101 |
T |
|
| Q |
211 |
ggggtagtaatgcctatgcctgatatcagagataaattacctaaaaggtcgtttttaccccggagtattcttgcgaaattacctttttctacttcaaaga |
310 |
Q |
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|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| |
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| T |
14866102 |
ggtacggtaatgcctatgcctgatattagagataaattacctaaaaggtcgtttttaccccggagtattcttgcgaaattaccgttttctacatccaaga |
14866201 |
T |
|
| Q |
311 |
ttgatgagatgaa |
323 |
Q |
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||||||||||||| |
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| T |
14866202 |
ttgatgagatgaa |
14866214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 269
Target Start/End: Complemental strand, 27079719 - 27079595
Alignment:
| Q |
145 |
agtggtagtttggtcaaaacatcggttgaaccgggtaagttttttcgggaaaacatgttgaaagaaggggtagtaatgcctatgcctgatatcagagata |
244 |
Q |
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|||| |||||||| |||| || |||| |||| ||||||||||| || ||||| ||||||||| ||||||| || ||||||||||| ||||| | |||| |
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| T |
27079719 |
agtgttagtttggcaaaaaaatgggttcaacctggtaagtttttccgagaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggata |
27079620 |
T |
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| Q |
245 |
aattacctaaaaggtcgtttttacc |
269 |
Q |
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||||||| ||||||||||||||| |
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| T |
27079619 |
aattaccgccaaggtcgtttttacc |
27079595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 266
Target Start/End: Complemental strand, 27065979 - 27065881
Alignment:
| Q |
168 |
ggttgaaccgggtaagttttttcgggaaaacatgttgaaagaaggggtagtaatgcctatgcctgatatcagagataaattacctaaaaggtcgttttt |
266 |
Q |
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|||| |||| ||||||||||| ||||| || |||||||| |||||| ||| ||||||||||| ||||| || ||||||||||| |||||||||||| |
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| T |
27065979 |
ggttcaacctggtaagtttttccgggagaagatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgttttt |
27065881 |
T |
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