View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_high_40 (Length: 324)
Name: NF13006_high_40
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_high_40 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 10207836 - 10207534
Alignment:
| Q |
19 |
aagataatattcatgaagtggaggacaatatctaggatcttgggtgagtatctaatatttcaaattggaatttccacactcaatttcgttcaagtatttg |
118 |
Q |
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| T |
10207836 |
aagatcatattcatgaagtggaggacaatatctaggatcttgggtgagtatctaatatttcaaattggaatttccacactcaatttcgttcaagtattgg |
10207737 |
T |
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| Q |
119 |
actaaacttaaatttattttaaaatttttataatcaaatttagataac-----atatgtatggtggaccttaaagatttggaggagctattacaagtaaa |
213 |
Q |
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| T |
10207736 |
actaaccttaaatttatttttaaatttttataatcaaatttagacaaccattgttatgtgtggtggaccttaaagatttggaggagctattacaagtaaa |
10207637 |
T |
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| Q |
214 |
tctaatgactaatgctactatnnnnnnnncattgatcagtgcacttcaannnnnnnataatatatctatacggtgtcatgcttggtttaagtgatttcat |
313 |
Q |
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| T |
10207636 |
tctaatgactaatgctacaataaaaaaaacattgatcagtgcacttcaatttttttatactatatctatatggtgtcatgcttggtttaagtgatttcat |
10207537 |
T |
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| Q |
314 |
ttc |
316 |
Q |
| |
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||| |
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| T |
10207536 |
ttc |
10207534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 1139339 - 1139279
Alignment:
| Q |
75 |
atttcaaattggaatttccacactcaatttcgttcaagtatttgactaaacttaaatttat |
135 |
Q |
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| T |
1139339 |
atttcaatttggaatttccaccctcaatttcgttttagtattgggataaccttaaatttat |
1139279 |
T |
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