View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13006_high_41 (Length: 318)

Name: NF13006_high_41
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13006_high_41
NF13006_high_41
[»] chr2 (1 HSPs)
chr2 (6-300)||(8930196-8930490)


Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 300
Target Start/End: Original strand, 8930196 - 8930490
Alignment:
6 aggagcacagatacaacttcaccaatctgtgtcgaataatgaatggctaatgtaaaacaacaaaacaaattttcatcatgttacataatctagtggtgtt 105  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
8930196 aggaccacaaatacaacttcaccaatctgtgtcgaataatgaatggctaatgtaaaacaacaaaacaaattttcatcatgttacaaaatctattggtgtt 8930295  T
106 aaactgaaacaagtttgtgttgtataagattcatgtgcattctcagcctccagactcattacacatgaacagtccgatacattaaagtttttgcatatgc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
8930296 aaactgaaacaagtttgtgttgtataagattcatgtgcattctcagcctccagactcattacacatgaacagtccgatacattaaagtttttgcgtatgc 8930395  T
206 agagtccggaaaccataatcgannnnnnnnnactcaagaacaatacagaaattgcattttttgtttatttatgaaattgtggttttaattaatac 300  Q
    ||||||||||||||||| ||||         |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
8930396 agagtccggaaaccatactcgatttttttttactcaagaacaatacagaaattgcgttttttgtttatttatgaaattgtggttttaattaatac 8930490  T

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