View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_high_45 (Length: 293)
Name: NF13006_high_45
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_high_45 |
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| [»] scaffold1063 (1 HSPs) |
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Alignment Details
Target: scaffold1063 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold1063
Description:
Target: scaffold1063; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 2978 - 3106
Alignment:
| Q |
21 |
ataattacttgaaaaatcattcgggttacactttaaagaaagcctatgaaccaaaatgttgctaccatatcttgtaggtttggatgaagcaataggatac |
120 |
Q |
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|||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2978 |
ataattacttgaaaaatccttcgagttatactttaaagaaagcctatgaaccaaaatgctgctaccatatgttgtaggtttggatgaagcaataggatac |
3077 |
T |
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| Q |
121 |
tgtgatgcttatggaaagatgccattttt |
149 |
Q |
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| T |
3078 |
tgtgatgcttatggaaagatgccattttt |
3106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 77 - 185
Target Start/End: Complemental strand, 6939870 - 6939762
Alignment:
| Q |
77 |
tgttgctaccatatcttgtaggtttggatgaagcaataggatactgtgatgcttatggaaagatgccatttttgtttcaagttgttgacaatatggtctc |
176 |
Q |
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| T |
6939870 |
tgttgctaccatatattgtaggtttggatgaagcatacggataccgtgatgcttatggaaagatgccatttttgcttcaagttgtcgacaatatggtttc |
6939771 |
T |
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| Q |
177 |
aatttcaaa |
185 |
Q |
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| T |
6939770 |
aatttcaaa |
6939762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 77 - 185
Target Start/End: Complemental strand, 6943045 - 6942937
Alignment:
| Q |
77 |
tgttgctaccatatcttgtaggtttggatgaagcaataggatactgtgatgcttatggaaagatgccatttttgtttcaagttgttgacaatatggtctc |
176 |
Q |
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| T |
6943045 |
tgttgctaccatatattgtagctttggatgaagcatacggatactgtgatgcttatggaaagatgccatttttgcttcaagttgtcgacaatatggtttc |
6942946 |
T |
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| Q |
177 |
aatttcaaa |
185 |
Q |
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| T |
6942945 |
aatttcaaa |
6942937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 6787948 - 6788014
Alignment:
| Q |
201 |
catagtttattgtgtgatggcgactgggggtacggttcaggggtaatgttgtaatctgaacaatagt |
267 |
Q |
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| T |
6787948 |
catagtttgttgtgtaatggcgactgggggtatggttcaggggtgatgttgtaatctggacaatagt |
6788014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 6939596 - 6939527
Alignment:
| Q |
201 |
catagtttattgtgtgatggcgactgggggtacggttcaggggtaatgttgtaatctgaacaatagtttt |
270 |
Q |
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| T |
6939596 |
catagtttgttgcgtgatggcgactgggggtacggttcacggttgatgttgtaatctggacaatagtttt |
6939527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 6942771 - 6942694
Alignment:
| Q |
201 |
catagtttattgtgtgatggcgactgggggtacggttcaggggtaatgttgtaatctgaacaatagt-tttatacaca |
277 |
Q |
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| T |
6942771 |
catagtttgttgcatgatggcgactgggggtacggttcagggttgatgttgtaatctggacaatagtgtttatacaca |
6942694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 185
Target Start/End: Original strand, 6787696 - 6787765
Alignment:
| Q |
118 |
tactgtgatgcttatggaaagatgccatttt--tgtttcaagttgttgacaatatggtctcaatttcaaa |
185 |
Q |
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| T |
6787696 |
tactgtgatgcttatggaaggatgccatttttctgtttgaagttgtcgacaatatggtttcaattgcaaa |
6787765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 6943123 - 6943078
Alignment:
| Q |
21 |
ataattacttgaaaaatcattcgggttacactttaaagaaagccta |
66 |
Q |
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| T |
6943123 |
ataattacttgaaaaatccttcaggttacactttaaagaaagccta |
6943078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 6939948 - 6939903
Alignment:
| Q |
21 |
ataattacttgaaaaatcattcgggttacactttaaagaaagccta |
66 |
Q |
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| T |
6939948 |
ataattacttgaaaaatccttcaggttacacttcaaagaaagccta |
6939903 |
T |
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