View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_high_46 (Length: 291)
Name: NF13006_high_46
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_high_46 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 23992657 - 23992898
Alignment:
| Q |
16 |
aatatgcaacggttgatgaaatgagaaatatacaaaacaataattaattaaaatggaacgtgacaaatttacctataaaaagaagtagcactaaattgag |
115 |
Q |
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| T |
23992657 |
aatatgcaacggttcatgaaaggagaaatatacaaaacaataattaattaaaatggaacgtgacaaatttacctataaaaagaagtagcactaaattgag |
23992756 |
T |
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| Q |
116 |
ggaaagcaannnnnnnnnnnnnntccatcaaagcatagcaataagccaaaaaacaaagaaagatacaaacatgagttcctataccaatggcaatggcaat |
215 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
23992757 |
ggaaagcaa----acacacacactccatcaaagcatagcaataagccaaaaaacaaacaaagatacaaacatgagttcctatac------------caat |
23992840 |
T |
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| Q |
216 |
ggcaatgggaaagtgaacaatggtgacagtagtgatacactctctgctatggtgttag |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23992841 |
ggcaatgggaaagtgaacaatggtgacagtagtgatacactctctgctatggtgttag |
23992898 |
T |
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