View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_high_49 (Length: 281)
Name: NF13006_high_49
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_high_49 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 36311879 - 36312143
Alignment:
| Q |
1 |
catcatccaaaacttttttcaaaaatgcttcttgatgagacatcagctcgttatattcctgcaagtaatccggattacaagtgtaatccgtgtgcttctc |
100 |
Q |
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| T |
36311879 |
catcatccaaaacttttttcaaaaatgcttcttgatgagacatcagctcgttatattcctgcaagtactccggattacaagtgtaatccgtgtgcttctc |
36311978 |
T |
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| Q |
101 |
catatcaacagcttgcatcacatgttgaatggaattgctcttcttcttagcaataacatgctccacagctctacgagtagcaacctgcaactggtaatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36311979 |
catatcaacagcttgcatcacatgttgaatggaattgctcttcttcttagcaataacatgctccacagctctacgagtagcaacctgcaactggtaatag |
36312078 |
T |
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| Q |
201 |
tttgcagagtggcgattcatgaccgagataacaaccctttccaaatagctccacacattgtcaac |
265 |
Q |
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| T |
36312079 |
tttgcagagtggcgattcatgaccgagataacaaccctttccaaatagctccacacattgtcaac |
36312143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 36304350 - 36304557
Alignment:
| Q |
12 |
acttttttcaaaaatgcttcttgatgagacatcagctcgttatattcctgcaagtaatccggattacaagtgtaatccgtgtgcttctccatatcaacag |
111 |
Q |
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|||| ||||||||| ||||| ||||||||||||||| |||||| ||||||||||| || || |||| ||||| || || |||||||||| ||||||| |
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| T |
36304350 |
acttctttcaaaaacacttctcgatgagacatcagcttgttatactcctgcaagtactcagggttacccgtgtagtctgtaagcttctccatctcaacag |
36304449 |
T |
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| Q |
112 |
cttgcatcacatgttgaatggaattgctcttcttcttagcaataacatgctccacagctctacgagtagcaacctgcaactggtaatagtttgcagagtg |
211 |
Q |
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| T |
36304450 |
cttgaagcacatgctgaatggaattctttttcttcttagagataaggtgctcagcagctctacgaattgaaacctgaagctgataatagttagcagaatg |
36304549 |
T |
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| Q |
212 |
gcgattca |
219 |
Q |
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||||||| |
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| T |
36304550 |
acgattca |
36304557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 36289406 - 36289522
Alignment:
| Q |
11 |
aacttttttcaaaaatgcttcttgatgagacatcagctcgttatattcctgcaagtaatccggattacaagtgtaatccgtgtgcttctccatatcaaca |
110 |
Q |
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||||| ||||| ||||| |||||| |||| |||||| ||||| ||| |||| || || ||||||||||||||||| || | || ||||| || ||| |
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| T |
36289406 |
aacttctttcacaaatgattcttgttgagctatcagcctattatactccagcaaatactcaggattacaagtgtaatctgtcagtttttccatctcgaca |
36289505 |
T |
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| Q |
111 |
gcttgcatcacatgttg |
127 |
Q |
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|||| |||||||||||| |
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| T |
36289506 |
gcttccatcacatgttg |
36289522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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