View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_high_52 (Length: 278)
Name: NF13006_high_52
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_high_52 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 5706249 - 5705990
Alignment:
| Q |
1 |
tcattacttcgattccttttcaggtttgtgaattctttcgtcaagcgttcatgttttttctgtttacacgttgttcggttaggttagttaaaatcagcaa |
100 |
Q |
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| T |
5706249 |
tcattacttcgattccctttcaggtttgtgaattctttcgtcaagcgttcatgatttttctgtttacatgttgttcggttaggttagttaaaatcagcaa |
5706150 |
T |
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| Q |
101 |
ttcatcggttgagatgattgtggtactttaagctgtttgaagttgtgaaatgttagtgtaattaattggttgaatcatttgattttggtgaatttgactc |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5706149 |
ttcatcggttgagatgattgtggcactttaagctgtttgaagttgtgaaatgttagtgtaattaattggttgaatcatttgattttggtgaatttgactc |
5706050 |
T |
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| Q |
201 |
tatattttgatcaacgtggcacggacacttctgattgaagacgtttccggtgtccaacac |
260 |
Q |
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| T |
5706049 |
tatattttgatcaacgtggcaccgacacttctgattgaagacgttcccggtgtccaacac |
5705990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 259
Target Start/End: Original strand, 20740424 - 20740458
Alignment:
| Q |
225 |
acacttctgattgaagacgtttccggtgtccaaca |
259 |
Q |
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|||||||||||||||||||||||| |||||||||| |
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| T |
20740424 |
acacttctgattgaagacgtttccagtgtccaaca |
20740458 |
T |
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