View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13006_high_54 (Length: 264)

Name: NF13006_high_54
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13006_high_54
NF13006_high_54
[»] chr6 (10 HSPs)
chr6 (19-258)||(11132896-11133135)
chr6 (42-257)||(11196626-11196841)
chr6 (42-257)||(11161040-11161255)
chr6 (42-257)||(11199791-11200006)
chr6 (42-196)||(11156234-11156388)
chr6 (42-232)||(11275882-11276072)
chr6 (42-196)||(11209356-11209510)
chr6 (81-257)||(11241511-11241688)
chr6 (33-184)||(11170546-11170697)
chr6 (42-184)||(11314783-11314925)
[»] scaffold1207 (1 HSPs)
scaffold1207 (42-232)||(816-1006)
[»] chr7 (5 HSPs)
chr7 (36-226)||(7877777-7877967)
chr7 (30-86)||(8654524-8654580)
chr7 (29-83)||(8628609-8628663)
chr7 (33-86)||(8576400-8576453)
chr7 (30-106)||(8590692-8590768)
[»] chr2 (3 HSPs)
chr2 (29-103)||(16662029-16662103)
chr2 (36-89)||(14703479-14703532)
chr2 (29-85)||(12234764-12234820)
[»] chr1 (1 HSPs)
chr1 (30-89)||(4678596-4678655)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 11133135 - 11132896
Alignment:
Q  19 gaatcaccactaaagccactgctggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagca 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11133135 gaatcaccactaaagccactgctggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttcttgaggaagca 11133036  T
Q  119 taaaattgacattagtggagatccaaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttccagtaatactgagaccacaatt 218  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11133035 taaaattgacattagtggagatcgaaaagcccttagacggttgaagtctgcatgtgagaaagcaaagaggatactttccagtaatactgagaccacaatt 11132936  T
Q  219 gagatagaatgtttgcatcaagggatagatttcttctcac 258  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  11132935 gagatagaatgtttgcatcaagggatagatttcttctcac 11132896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 42 - 257
Target Start/End: Complemental strand, 11196841 - 11196626
Alignment:
Q  42 ggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatc 141  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||    
T  11196841 ggagacactcaccttgggggacaagactttgataatacaatggtgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatc 11196742  T
Q  142 caaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttccagtaatactgagaccacaattgagatagaatgtttgcatcaagg 241  Q
    ||| |||||||||| ||||||||||||| || ||||||||||| |||||||||||    ||||||  |||||| ||||||||||   ||||  |||||||    
T  11196741 caagagcccttaggaggttgaagtctgcttgcgagaaagcaaaaaggatactttcttccaatactacgaccaccattgagatagggagtttaaatcaagg 11196642  T
Q  242 gatagatttcttctca 257  Q
     |||||||||| ||||    
T  11196641 tatagatttctactca 11196626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 42 - 257
Target Start/End: Complemental strand, 11161255 - 11161040
Alignment:
Q  42 ggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatc 141  Q
    ||||| ||||||||  ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||    
T  11161255 ggagacactcaccttaggggacaagactttgataatacaatggtgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatc 11161156  T
Q  142 caaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttccagtaatactgagaccacaattgagatagaatgtttgcatcaagg 241  Q
    ||| |||||||||| ||||||| ||||| || ||||||||||| |||||||||||    ||||||  |||||| |||||||||||  ||||  |||||||    
T  11161155 caagagcccttaggaggttgaactctgcttgcgagaaagcaaaaaggatactttcttccaatactacgaccaccattgagatagagagtttaaatcaagg 11161056  T
Q  242 gatagatttcttctca 257  Q
     |||||||||| ||||    
T  11161055 aatagatttctactca 11161040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 42 - 257
Target Start/End: Complemental strand, 11200006 - 11199791
Alignment:
Q  42 ggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatc 141  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||    
T  11200006 ggagacactcaccttgggggacaagactttgataatacaatggtgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatc 11199907  T
Q  142 caaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttccagtaatactgagaccacaattgagatagaatgtttgcatcaagg 241  Q
    ||| |||||||||| ||| ||||||||| || ||||||||||| |||||||||||    ||||||  |||||| |||||||||||  ||||  |||||||    
T  11199906 caagagcccttaggaggtagaagtctgcttgcgagaaagcaaaaaggatactttcttccaatactacgaccaccattgagatagagagtttaaatcaagg 11199807  T
Q  242 gatagatttcttctca 257  Q
      ||||||||| ||||    
T  11199806 tttagatttctactca 11199791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 42 - 196
Target Start/End: Complemental strand, 11156388 - 11156234
Alignment:
Q  42 ggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatc 141  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||    
T  11156388 ggagacactcaccttgggggacaagactttgataatacaatggtgaaccattttgtgaatgagttctcgaggaagtataaaatcgacattagtggagatc 11156289  T
Q  142 caaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttc 196  Q
    ||| |||||||||| ||||||||||||| || ||||||||||| |||||||||||    
T  11156288 caagagcccttaggaggttgaagtctgcttgcgagaaagcaaaaaggatactttc 11156234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 42 - 232
Target Start/End: Complemental strand, 11276072 - 11275882
Alignment:
Q  42 ggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatc 141  Q
    ||||| |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||    
T  11276072 ggagacactcacctcgggggacaagactttgataatgcaatggtgaaccattttgtgaaagagttcttgaggaagcataaaaatgacattagtggagatc 11275973  T
Q  142 caaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttccagtaatactgagaccacaattgagatagaatgttt 232  Q
    ||| |||| ||||| || ||||| |||| || |||| || ||| |||||||||||    |||| |||||| || |||||||||||||||||    
T  11275972 caagagccattaggaggctgaagactgcttgcgagagagtaaaaaggatactttctgtcaatagtgagactaccattgagatagaatgttt 11275882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 42 - 196
Target Start/End: Complemental strand, 11209510 - 11209356
Alignment:
Q  42 ggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatc 141  Q
    ||||| |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||| ||||||| | ||||| |||||||||||| |||    
T  11209510 ggagacactcacctcgggggacaagactttgataatgcaatggtgaaccattttgtgaaagagttcttgaggaaggaaaaaatggacattagtggaaatc 11209411  T
Q  142 caaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttc 196  Q
    ||| |||||||||| || ||||| |||| || |||| |||||| |||||||||||    
T  11209410 caagagcccttaggaggctgaagactgcttgcgagagagcaaaaaggatactttc 11209356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 81 - 257
Target Start/End: Original strand, 11241511 - 11241688
Alignment:
Q  81 atggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatccaaaagcccttaggcggttgaagtctgcatgtgagaaag 180  Q
    |||||||||||||| ||||||||||||||||||||| ||||||| ||||||||| ||||||||| |||||||||| ||||||||||||| || |||||||    
T  11241511 atggtgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtagagatccaagagcccttaggaggttgaagtctgcttgcgagaaag 11241610  T
Q  181 c-aaagaggatactttccagtaatactgagaccacaattgagatagaatgtttgcatcaagggatagatttcttctca 257  Q
    | ||| ||||||||||     ||||||  |||||| |||||||||||  ||||  ||||||| |||||||||| ||||    
T  11241611 caaaaaaggatactttattccaatactacgaccaccattgagatagagagtttaaatcaaggtatagatttctactca 11241688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 33 - 184
Target Start/End: Complemental strand, 11170697 - 11170546
Alignment:
Q  33 gccactgctggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacatta 132  Q
    |||||||  ||||| |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||| ||| || |||||| | |||||||    
T  11170697 gccactggaggagacactcacctcgggggacaagactttgataatgcaatggtgaaccattttgtgaaagagttcttgagaaaacataaactcgacatta 11170598  T
Q  133 gtggagatccaaaagcccttaggcggttgaagtctgcatgtgagaaagcaaa 184  Q
    |||||||||||| |||| ||||| || ||||| |||| || |||| ||||||    
T  11170597 gtggagatccaagagccattaggaggctgaagactgcttgcgagagagcaaa 11170546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 184
Target Start/End: Original strand, 11314783 - 11314925
Alignment:
Q  42 ggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatc 141  Q
    ||||| |||||||| ||||||||||||||  |||| |||||||||||  |||| ||| ||| ||||  || || | ||||||| |||||||||||||||     
T  11314783 ggagacactcaccttgggggacaagacttcaataatacaatggtgaaatattttgtggaagtgttccggaagaggtataaaatagacattagtggagatt 11314882  T
Q  142 caaaagcccttaggcggttgaagtctgcatgtgagaaagcaaa 184  Q
     || | |||||||| |||||||||| || || |||||||||||    
T  11314883 taacatcccttaggaggttgaagtcagcttgcgagaaagcaaa 11314925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 232
Target Start/End: Complemental strand, 1006 - 816
Alignment:
Q  42 ggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtggagatc 141  Q
    ||||| ||||||||| |||| ||||||||||||||| |||||||||||||||| ||||||| |||||  |||||| ||||||| ||||||||||||||||    
T  1006 ggagacactcacctcagggggcaagactttgataacgcaatggtgaaccattttgtgaaagtgttcttaaggaagtataaaatcgacattagtggagatc 907  T
Q  142 caaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttccagtaatactgagaccacaattgagatagaatgttt 232  Q
    ||| |||| ||||| || ||||| |||| ||||||| | |||| |||||||||||    |||||| |||| || ||||||||||| |||||    
T  906 caagagccgttaggaggctgaagactgcttgtgagagatcaaaaaggatactttctgtcaatacttagactaccattgagatagagtgttt 816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 226
Target Start/End: Original strand, 7877777 - 7877967
Alignment:
Q  36 actgctggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagttctcgaggaagcataaaattgacattagtg 135  Q
    ||||| |||||||||||||| || ||| | ||||||||||||| |||| |||||||||| ||||  |||||   ||||||| ||||| | |||||| |||    
T  7877777 actgccggagatactcacctaggtggagaggactttgataacagaatgttgaaccatttagtgatggagtttaagaggaagaataaagtggacattggtg 7877876  T
Q  136 gagatccaaaagcccttaggcggttgaagtctgcatgtgagaaagcaaagaggatactttccagtaatactgagaccacaattgagataga 226  Q
    || | || |  ||||||||| ||||||   ||||||||||||  || || |||| ||| ||   | |||||||||| |||||||| |||||    
T  7877877 gaaacccgagggcccttaggaggttgagaactgcatgtgagagggctaaaaggacactgtcatttgatactgagactacaattgacataga 7877967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 8654580 - 8654524
Alignment:
Q  30 aaagccactgctggagatactcacctcgggggacaagactttgataacacaatggtg 86  Q
    ||||||||||||||| | || ||||| |||||| ||||||||||||||| |||||||    
T  8654580 aaagccactgctggaaacacgcacctagggggagaagactttgataacagaatggtg 8654524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 8628663 - 8628609
Alignment:
Q  29 taaagccactgctggagatactcacctcgggggacaagactttgataacacaatg 83  Q
    |||||||||||||||| |||||||||| || ||| | ||||||||||||| ||||    
T  8628663 taaagccactgctggaaatactcaccttggtggagaggactttgataacagaatg 8628609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 8576453 - 8576400
Alignment:
Q  33 gccactgctggagatactcacctcgggggacaagactttgataacacaatggtg 86  Q
    |||||||| ||||| |||||||| || || |||||||||||||||| |||||||    
T  8576453 gccactgccggagacactcacctaggaggccaagactttgataacataatggtg 8576400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 8590768 - 8590692
Alignment:
Q  30 aaagccactgctggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaagagtt 106  Q
    ||||||||| | |||||||| ||||| || ||| | ||||||||||||| ||||||  ||||||| ||||| |||||    
T  8590768 aaagccacttccggagatacccacctaggaggagaggactttgataacagaatggttcaccatttggtgaaggagtt 8590692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 16662029 - 16662103
Alignment:
Q  29 taaagccactgctggagatactcacctcgggggacaagactttgataacacaatggtgaaccatttcgtgaaaga 103  Q
    |||||||||| ||||| | ||||||||||||||| | ||||||||||||| |||| ||||| | || ||||||||    
T  16662029 taaagccacttctggaaacactcacctcgggggagaggactttgataacagaatgttgaactactttgtgaaaga 16662103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 14703532 - 14703479
Alignment:
Q  36 actgctggagatactcacctcgggggacaagactttgataacacaatggtgaac 89  Q
    ||||||||| | ||||||||||||||| | ||||| ||||||| ||||||||||    
T  14703532 actgctggaaacactcacctcgggggagaggacttcgataacagaatggtgaac 14703479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 12234820 - 12234764
Alignment:
Q  29 taaagccactgctggagatactcacctcgggggacaagactttgataacacaatggt 85  Q
    ||||||||| || ||| | ||||||||||||||| | ||||||||||||| ||||||    
T  12234820 taaagccacagccggaaacactcacctcgggggagaggactttgataacagaatggt 12234764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 4678596 - 4678655
Alignment:
Q  30 aaagccactgctggagatactcacctcgggggacaagactttgataacacaatggtgaac 89  Q
    ||||||||||||||| | |||||||| || ||| | ||||||||||||| ||||||||||    
T  4678596 aaagccactgctggaaacactcacctaggtggagaggactttgataacagaatggtgaac 4678655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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