View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_high_62 (Length: 239)
Name: NF13006_high_62
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_high_62 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 11786409 - 11786604
Alignment:
| Q |
19 |
catggaacatcccaaagcatctaacgtagtttcttctccattcccaatctctcttcttagacttttcagagaccaattcgacgtaactccccacaccact |
118 |
Q |
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| T |
11786409 |
catggaacatcccaaagtatctaacgtaatttcttctccatttccaatctctcttcttagacttttcgaagaccaattcgacgtaactccccacaccact |
11786508 |
T |
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| Q |
119 |
atctctaaagtatctacatctttccttcatgctgaac-aaatctcccatattaatgcggatatttactcaccaaaactctaaacctcaaactgttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11786509 |
atctctaaagtatctacatctttccttcatgctgcacaaaatctcccatattaatgcggatatttactcaccaaaactctaaacctcaaactgttt |
11786604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 11798576 - 11798771
Alignment:
| Q |
19 |
catggaacatcccaaagcatctaacgtagtttcttctccattcccaatctctcttcttagacttttcagagaccaattcgacgtaactccccacaccact |
118 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11798576 |
catggaacatcccaaagtatctaacgtaatttcttctccatttccaatctctcttcttagacttttcgaagaccaattcgacgtaactccccacaccact |
11798675 |
T |
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| Q |
119 |
atctctaaagtatctacatctttccttcatgctgaac-aaatctcccatattaatgcggatatttactcaccaaaactctaaacctcaaactgttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11798676 |
atctctaaagtatctacatctttccttcatgctgcacaaaatctcccatattaatgcggatatttactcaccaaaactctaaacctcaaactgttt |
11798771 |
T |
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