View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_high_8 (Length: 612)
Name: NF13006_high_8
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_high_8 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 189 - 612
Target Start/End: Original strand, 37705631 - 37706051
Alignment:
| Q |
189 |
caggtggtcattgatagctgggagaattccaggaagaaccgataatgagataaaaaattattggaacacacatctcagcaagaaacttattaaccaaggg |
288 |
Q |
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| T |
37705631 |
caggtggtcattgatagctgggagaattccaggaagaaccgataatgagattaaaaattattggaacacacatctcagcaagaaacttattaaccaaggg |
37705730 |
T |
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| Q |
289 |
attgatcccagaactcacaagcctcttaataacccatcttcttcttcttcaataatcccaaatactaatcaccaaacaagtactccnnnnnnngcaccat |
388 |
Q |
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| T |
37705731 |
attgatcccagaactcacaagcctcttaataacccatcttcttcttcttcaataatcccaaatactaatcaccaaacaagtactcctttttttgcaccat |
37705830 |
T |
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| Q |
389 |
cttcttctgatcatcatcatcatccaattactatcactaacaatgaacctgatccctctcaaacacaacaagctcagggttgtggtaacttggttaatga |
488 |
Q |
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| T |
37705831 |
cttcttctgatca---tcatcatccaattactatcactaacaatgaacctgatccctctcaaacacaacaagctcagggttgtggtaacttggttaatga |
37705927 |
T |
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| Q |
489 |
tgtttctgcaatggataatcatcatgtgcttaccaacaacaacagaggggattatggagacgacaatggtaataacaattacggcggtgatgatgtgttt |
588 |
Q |
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| T |
37705928 |
tgtttctgcaatggataatcatcatgtgcttaccaacaacaacagaggggattatggagacgacaatggtaataacaattacggcggtgatgatgtgttt |
37706027 |
T |
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| Q |
589 |
acttcatttctggattcattgatc |
612 |
Q |
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| T |
37706028 |
acttcatttctggattcattgatc |
37706051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 37705458 - 37705556
Alignment:
| Q |
18 |
aagatctcatcctccgcctccaccgtcttctcggcaacaggtttacataatc---attcctgatcttatatatatagatagggtttcatttattcaactt |
114 |
Q |
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| T |
37705458 |
aagatctcatcctccgcctccaccgtcttctcggcaacaggtttacataatcattattcctgatcttat--------atagggtttcatttattcaactt |
37705549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 55166141 - 55166100
Alignment:
| Q |
220 |
ggaagaaccgataatgagataaaaaattattggaacacacat |
261 |
Q |
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| T |
55166141 |
ggaagaacagataatgagataaaaaattattggaatacacat |
55166100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 27808544 - 27808608
Alignment:
| Q |
193 |
tggtcattgatagctgggagaattccaggaagaaccgataatgagataaaaaattattggaacac |
257 |
Q |
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| T |
27808544 |
tggtctttgatagctggaagattaccaggaagaacagataatgagataaagaattattggaacac |
27808608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 3911863 - 3911903
Alignment:
| Q |
223 |
agaaccgataatgagataaaaaattattggaacacacatct |
263 |
Q |
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| T |
3911863 |
agaacagataatgagataaagaattattggaacacacatct |
3911903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 1318508 - 1318462
Alignment:
| Q |
215 |
ttccaggaagaaccgataatgagataaaaaattattggaacacacat |
261 |
Q |
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| T |
1318508 |
ttccaggaaggacagataatgagataaagaatttttggaacacacat |
1318462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 12552372 - 12552413
Alignment:
| Q |
217 |
ccaggaagaaccgataatgagataaaaaattattggaacaca |
258 |
Q |
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|||||| |||| ||||| |||||||||||||||||||||||| |
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| T |
12552372 |
ccaggacgaacagataacgagataaaaaattattggaacaca |
12552413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 33928531 - 33928490
Alignment:
| Q |
222 |
aagaaccgataatgagataaaaaattattggaacacacatct |
263 |
Q |
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| T |
33928531 |
aagaacagataatgatataaagaattattggaacacacatct |
33928490 |
T |
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