View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13006_low_1 (Length: 1540)

Name: NF13006_low_1
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13006_low_1
NF13006_low_1
[»] chr6 (42 HSPs)
chr6 (17-534)||(31564316-31564843)
chr6 (1011-1300)||(31565162-31565451)
chr6 (593-879)||(31564838-31565117)
chr6 (682-946)||(33414524-33414788)
chr6 (1342-1519)||(31565454-31565631)
chr6 (1011-1177)||(33414293-33414459)
chr6 (313-679)||(33385314-33385670)
chr6 (313-679)||(33259583-33259959)
chr6 (707-946)||(33269497-33269740)
chr6 (682-946)||(33395008-33395274)
chr6 (682-909)||(33258187-33258416)
chr6 (1011-1167)||(33383760-33383916)
chr6 (775-946)||(33383981-33384156)
chr6 (112-276)||(33416366-33416536)
chr6 (487-679)||(33416152-33416345)
chr6 (1036-1167)||(33351400-33351530)
chr6 (680-852)||(33278972-33279139)
chr6 (494-679)||(24631975-24632161)
chr6 (1011-1121)||(33292802-33292912)
chr6 (1339-1450)||(33413910-33414021)
chr6 (682-786)||(33293090-33293194)
chr6 (1050-1153)||(33258067-33258170)
chr6 (845-935)||(33292988-33293078)
chr6 (1193-1349)||(33414090-33414254)
chr6 (1015-1087)||(33269355-33269427)
chr6 (453-635)||(9165228-9165418)
chr6 (1339-1421)||(33351038-33351120)
chr6 (26-155)||(33385707-33385837)
chr6 (1181-1319)||(33351212-33351363)
chr6 (725-849)||(33280358-33280482)
chr6 (336-442)||(24631864-24631970)
chr6 (450-524)||(29274300-29274376)
chr6 (41-100)||(33281320-33281376)
chr6 (1037-1077)||(31567428-31567468)
chr6 (682-728)||(28873045-28873091)
chr6 (29-83)||(33416538-33416592)
chr6 (41-100)||(33301947-33302003)
chr6 (344-419)||(281808-281881)
chr6 (593-634)||(33282241-33282282)
chr6 (593-634)||(33398042-33398083)
chr6 (593-634)||(33408952-33408993)
chr6 (1474-1519)||(33413822-33413867)
[»] chr2 (11 HSPs)
chr2 (682-903)||(17447760-17447982)
chr2 (1011-1177)||(17445747-17445910)
chr2 (1195-1271)||(17445951-17446026)
chr2 (1339-1413)||(17446159-17446233)
chr2 (29-158)||(17443374-17443503)
chr2 (874-946)||(17445607-17445679)
chr2 (313-378)||(17443537-17443602)
chr2 (450-531)||(34339039-34339122)
chr2 (483-523)||(3102617-3102657)
chr2 (341-418)||(14299588-14299663)
chr2 (450-511)||(7103554-7103615)
[»] scaffold0428 (8 HSPs)
scaffold0428 (682-909)||(2308-2537)
scaffold0428 (313-549)||(3802-4047)
scaffold0428 (680-852)||(15114-15281)
scaffold0428 (1050-1153)||(2188-2291)
scaffold0428 (725-849)||(13771-13895)
scaffold0428 (593-679)||(3704-3791)
scaffold0428 (41-100)||(12876-12932)
scaffold0428 (593-634)||(11970-12011)
[»] chr5 (7 HSPs)
chr5 (121-275)||(30653203-30653360)
chr5 (402-524)||(11684346-11684468)
chr5 (383-448)||(30653373-30653438)
chr5 (450-531)||(32059660-32059742)
chr5 (487-531)||(10391269-10391313)
chr5 (343-394)||(11457158-11457209)
chr5 (492-531)||(29115328-29115367)
[»] chr8 (8 HSPs)
chr8 (341-419)||(13000381-13000457)
chr8 (458-526)||(26717178-26717246)
chr8 (436-522)||(5290566-5290649)
chr8 (468-531)||(26716527-26716590)
chr8 (341-419)||(30191098-30191174)
chr8 (398-484)||(10079082-10079168)
chr8 (398-447)||(30389108-30389157)
chr8 (450-524)||(34788498-34788574)
[»] chr3 (6 HSPs)
chr3 (343-419)||(43115093-43115167)
chr3 (453-531)||(38462197-38462277)
chr3 (451-524)||(22232749-22232824)
chr3 (458-540)||(3015928-3016011)
chr3 (341-419)||(37273171-37273247)
chr3 (320-416)||(24624250-24624344)
[»] chr7 (4 HSPs)
chr7 (343-456)||(3468614-3468725)
chr7 (450-531)||(3610811-3610894)
chr7 (402-523)||(26935573-26935696)
chr7 (487-565)||(22388014-22388093)
[»] chr1 (2 HSPs)
chr1 (468-521)||(44207697-44207750)
chr1 (341-392)||(15581316-15581367)
[»] scaffold0024 (1 HSPs)
scaffold0024 (436-509)||(21335-21410)
[»] chr4 (3 HSPs)
chr4 (468-522)||(32920489-32920543)
chr4 (458-525)||(47970240-47970309)
chr4 (438-508)||(55437345-55437415)


Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 42)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 17 - 534
Target Start/End: Original strand, 31564316 - 31564843
Alignment:
Q  17 acctgtggtagtacaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564316 acctgtggtagtacaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttca 31564415  T
Q  117 gacaaaggctcgagtaatggtttcaatttcatcttatttgct----gtttctattctaatttttctacatctaatagaagtaaatatgttagacagattt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564416 gacaaaggctcgagtaatggtttcaatttcatcttatttgcttaatgtttctattctaatttttctacatctaatagaagtaaatatgttagacagattt 31564515  T
Q  213 gaatttatacatgtatttcaatttttacatgt------aaaagagaaaaaatgaattatacttccattttgcccatcttctcatattgttttgcctcttg 306  Q
    ||||||||||||||||||||||||||||||||      |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  31564516 gaatttatacatgtatttcaatttttacatgtaaatgtaaaagagaaaaaattaattatacttccattttgcccatcttttcatattgttttgcctcttg 31564615  T
Q  307 tggattgatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttt 406  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31564616 tggattgatatatttgaacttatacactcatattagcacttgtgagactgtttcgaagagttaatggaaacaactaatgacatgtccacaaaagttgttt 31564715  T
Q  407 tcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacat 506  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  31564716 tcagcttatttccatatgttgtctagaaaagcttatgaaaatcacttgtaggaaaacagtgtgacttcattttatcttgttataaaaatagcttatacat 31564815  T
Q  507 aagcaattttatgataagtgtttatctt 534  Q
    | ||||||||||||||||||||||||||    
T  31564816 atgcaattttatgataagtgtttatctt 31564843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 286; E-Value: 1e-159
Query Start/End: Original strand, 1011 - 1300
Target Start/End: Original strand, 31565162 - 31565451
Alignment:
Q  1011 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 1110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565162 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 31565261  T
Q  1111 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactcttggagaaacaattatagcttaaaaagttttcaagaaaagtatt 1210  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565262 aagtatagctgccattggcgagaacattaatgtgcggcgttttgttcggttcactcttggagaaacaattatagcttaaaaagttttcaagaaaagtatt 31565361  T
Q  1211 tgttgcattttcataggaagaagtatacaacagagtgagatcaattttgaaaacagaaatcataataaccaaatgttgattagacgccaa 1300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565362 tgttgcattttcataggaagaagtatacaacagagtgagatcaattttgaaaacagaaatcataataaccaaatgttgattagacgccaa 31565451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 593 - 879
Target Start/End: Original strand, 31564838 - 31565117
Alignment:
Q  593 tatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtcccctttgaattgcagcaactatatcaccaacacttgcatgaaaaggcgc 692  Q
    ||||||| |||||||||||||| ||| || |||||||||||||||||   |||||||| ||||||||||       |||||||||| |||||||||||||    
T  31564838 tatctttaaattcttacataagatttctattttttaaatgtctattccaccccctttggattgcagcaa-------accaacacttacatgaaaaggcgc 31564930  T
Q  693 aagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacat 792  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  31564931 aagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacatacattcacgattcacgcat 31565030  T
Q  793 tagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgca 879  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31565031 tagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 181; E-Value: 4e-97
Query Start/End: Original strand, 682 - 946
Target Start/End: Complemental strand, 33414788 - 33414524
Alignment:
Q  682 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 781  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||| |||||||||||||    
T  33414788 tgaaaaggcgcaagcatatctcaggaaaaagggtctctcatccgctgataagaaatccggaagactagcagctgaaggaagaatcggtacatacattcac 33414689  T
Q  782 gattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaag 881  Q
    ||| |||  ||| ||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  33414688 gatgcacgtattggtgttctaattgaagtgaactgtgaaacggactttgttggcagaagtgagaaattcaaggagttggttgatgatcttgcaatgcaag 33414589  T
Q  882 ttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 946  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||| | ||||||||||    
T  33414588 ttgctgcttgtccacaggttcagtttgtatctattgaagatattcccgaaactattgtgacgaag 33414524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 170; E-Value: 2e-90
Query Start/End: Original strand, 1342 - 1519
Target Start/End: Original strand, 31565454 - 31565631
Alignment:
Q  1342 tctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcattgatctattcaaggatagacactctttga 1441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31565454 tctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcattgatctattcaaggatagccactctttga 31565553  T
Q  1442 ttacagtatacaaatattgtgaaatttactttataagttatgcatatatctaaaaagtgaaagcttaaaggaagcgat 1519  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31565554 ttacagtatacaaatattgtgaaatttactctataagttatgcatatatctaaaaagtgaaagcttaaaggaagcgat 31565631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 127; E-Value: 7e-65
Query Start/End: Original strand, 1011 - 1177
Target Start/End: Complemental strand, 33414459 - 33414293
Alignment:
Q  1011 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 1110  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||    
T  33414459 ttgtcgagggaagaatctcaaagaggttaggagagcttgctcttctagagcagccttttattaaggatgacagtgttgtagtgaaagacttggtgaggca 33414360  T
Q  1111 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactcttggagaaaca 1177  Q
    |||||||||||| ||||| ||||||||||  |||||||||||||||||||||||||| |||||||||    
T  33414359 aagtatagctgctattggagagaacattaaagtgcggcgttttgttcggttcactctcggagaaaca 33414293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 122; E-Value: 7e-62
Query Start/End: Original strand, 313 - 679
Target Start/End: Complemental strand, 33385670 - 33385314
Alignment:
Q  313 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagct 412  Q
    |||| ||||||||||||  | | |||| ||||||||||| ||||||| |||||||| ||||||||| |  |||||||||||| |||||||||||||||||    
T  33385670 gatgcatttgaacttatctactgatataagcacttgtgaaactgtttggaagagtttatggaaacagctcatgacatgtccataaaagttgttttcagct 33385571  T
Q  413 tatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatc--ttgctataaaaatagcttatacataagc 510  Q
    | ||||| ||   ||||||||||||||||||||||| |||||||| | |  |||||||||||||||||||  ||| ||||||||| |||||||||| |||    
T  33385570 tttttccataaactgtctagaaaagcttatgaaaatagcttatagcata--agtatgacttcattttatcttttgttataaaaattgcttatacatcagc 33385473  T
Q  511 aattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctgttcacctatctttgaattcttaca 610  Q
    | || ||||  ||||| ||||||| |||| ||| |||||| | ||||           |||||| |||| ||||||||||||||||||||||||||||||    
T  33385472 acttatatgtaaagtgcttatcttataagttttcattaggctgttta-----------tcttaggtttccagcctgttcacctatctttgaattcttaca 33385384  T
Q  611 taaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 679  Q
    |||| ||| ||||  |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  33385383 taagatttctaatcgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 33385314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 120; E-Value: 1e-60
Query Start/End: Original strand, 313 - 679
Target Start/End: Complemental strand, 33259959 - 33259583
Alignment:
Q  313 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagct 412  Q
    |||||||||||||||||| | | |||| ||||||||  | ||||||| |||||||| ||||||||  | ||||||||||||| ||||| ||||||||||     
T  33259959 gatgtatttgaacttatatattgatataagcacttgccaaactgtttggaagagtttatggaaacggctaatgacatgtccataaaagctgttttcagcc 33259860  T
Q  413 tatttccgtatgttgtctagaaaagcttatgaaaatcgcttatag-------gaaaacagtatgacttcattttatctt--gctataaaaatagcttata 503  Q
      ||| | |||  ||| ||||||||||||||||||| ||||||||       |||||||||||||||||| ||||||||  | |||||||||||||||||    
T  33259859 attttacatatactgtatagaaaagcttatgaaaatagcttatagcatataggaaaacagtatgacttcaatttatcttttgttataaaaatagcttata 33259760  T
Q  504 cataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctgttcacctatctttgaat 603  Q
    |||||||| || ||||  |||   ||||||| ||||||| ||||||| | ||||||||||| | ||||||| |||| |||||  | || |||||||||||    
T  33259759 cataagcacttatatgtaaagctcttatcttataagcttgaattaggctgtttatccaaacaaggtcttaggtttccagccttcttacatatctttgaat 33259660  T
Q  604 tcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 679  Q
    ||||||||||| ||| || || |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  33259659 tcttacataagatttatagttgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 33259583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 119; E-Value: 4e-60
Query Start/End: Original strand, 707 - 946
Target Start/End: Complemental strand, 33269740 - 33269497
Alignment:
Q  707 aaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata----cattcacgattcacacattagtgttcta 802  Q
    ||||||||||||||||||||||| ||||| || | ||||| ||  ||||||| |||||||| ||||||    ||||||| || ||  |||  ||||||||    
T  33269740 aaaaagggtctctcatccgctgataagaagtctgcaagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttcta 33269641  T
Q  803 attgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttc 902  Q
    ||||||||||| |||||||| |||||| | || |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||    
T  33269640 attgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttc 33269541  T
Q  903 agtttgtatctattgaagatattcctaaaaccactgtgacgaag 946  Q
    |||||||||||||||||||||||||  |||| | ||||||||||    
T  33269540 agtttgtatctattgaagatattcccgaaactattgtgacgaag 33269497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 104; E-Value: 4e-51
Query Start/End: Original strand, 682 - 946
Target Start/End: Complemental strand, 33395274 - 33395008
Alignment:
Q  682 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 781  Q
    ||||||||| ||| ||||||| |||| ||||||||||||||| ||||||||||||||||| || | ||  |||||||||||||||| || ||||||| ||    
T  33395274 tgaaaaggcccaatcataccttagaacaaagggtctctcatcagctgacaagaaatccggtaggctagcagctgaaggaagaatcggtaaatacattgac 33395175  T
Q  782 gattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcgg--tagaagtgagaaattcaaggagtttgttcatgatcttgcaatgca 879  Q
    ||| ||| |||   |||||| ||||||||||| |||||||| |||||| | ||   |||||||| | |||||||||||| |||  ||||||| |||||||    
T  33395174 gatgcacgcatctatgttctgattgaagtgaactgtgaaaccgactttgttggcacagaagtgatagattcaaggagttggttgctgatctttcaatgca 33395075  T
Q  880 agttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 946  Q
    |   ||||||||||||||||||||||||||||||||||||| ||||| | |||||| || |||||||    
T  33395074 ataggctgcttgtccacaggttcagtttgtatctattgaaggtattcttgaaaccattgcgacgaag 33395008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 102; E-Value: 6e-50
Query Start/End: Original strand, 682 - 909
Target Start/End: Complemental strand, 33258416 - 33258187
Alignment:
Q  682 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattca 780  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || ||     
T  33258416 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 33258317  T
Q  781 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 880  Q
    ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||| ||| | |||||||||||||||    
T  33258316 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 33258217  T
Q  881 gttgctgctt-gtccacaggttcagtttgt 909  Q
    || |||  || |||||||||||||||||||    
T  33258216 gtagctttttggtccacaggttcagtttgt 33258187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 1011 - 1167
Target Start/End: Complemental strand, 33383916 - 33383760
Alignment:
Q  1011 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 1110  Q
    ||||||||||||||||||||||||| |||  ||| || |||||| || |||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  33383916 ttgttgagggaagaatctcaaagaggttaccagatctcgctcttataaagcagcctttcattaaggatgacagtgtttcagtgaaagacttggtgaggca 33383817  T
Q  1111 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactct 1167  Q
    |||||||||||||||||||||||||||||  |   ||||||||||||||||||||||    
T  33383816 aagtatagctgccattggcgagaacattaaagctgggcgttttgttcggttcactct 33383760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 87; E-Value: 5e-41
Query Start/End: Original strand, 775 - 946
Target Start/End: Complemental strand, 33384156 - 33383981
Alignment:
Q  775 cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgca 874  Q
    ||||||| ||||||||||  ||||||||||||||||||| ||| |||| |||||| |||| |||||||||||| | |||||||| ||| |||||||||||    
T  33384156 cattcactattcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgca 33384057  T
Q  875 atgcaagttgc----tgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 946  Q
    |||||||| ||    |||||||||| ||||||||||||||||| |||||||||||| | |||||| ||||||||||    
T  33384056 atgcaagtggctgcttgcttgtccagaggttcagtttgtatctgttgaagatattcttgaaaccattgtgacgaag 33383981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 87; E-Value: 5e-41
Query Start/End: Original strand, 112 - 276
Target Start/End: Complemental strand, 33416536 - 33416366
Alignment:
Q  112 cttcagacaaaggctcgagtaatggtttcaatttcatcttatttgctg----tttctattctaatttttctacatctaatagaagtaaatatgttagaca 207  Q
    |||||||  ||||||||||||| |||||| |||||||||||||||||     |||| ||||| ||||||||| ||| |||||||||||||||||| ||||    
T  33416536 cttcagatgaaggctcgagtaaaggtttccatttcatcttatttgcttcatatttcaattctcatttttctatatcaaatagaagtaaatatgttggaca 33416437  T
Q  208 gatttgaatttatacatgtatttcaatttttacatgtaaaagagaaaaaatga--attatacttccatttt 276  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||  | ||||||||||||||    
T  33416436 gatttgaatttatacatgtatttcagtttttacatgtaaaagagaagaaaagatgaatatacttccatttt 33416366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 487 - 679
Target Start/End: Complemental strand, 33416345 - 33416152
Alignment:
Q  487 tataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctg 586  Q
    ||||||||||||||||||||||||| ||| || || || | ||||||| ||||||||||||||||| ||||||||||| | ||| | ||||||||| |||    
T  33416345 tataaaaatagcttatacataagcactttgataatgagcgcttatcttataagctttaattaggttgtttatccaaacaaggtcatggttttctagtctg 33416246  T
Q  587 ttcacctatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 679  Q
    |||||||||||||||||| |||  ||||  || ||||| |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  33416245 ttcacctatctttgaatttttagttaagacttctaattgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 33416152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 80; E-Value: 8e-37
Query Start/End: Original strand, 1036 - 1167
Target Start/End: Complemental strand, 33351530 - 33351400
Alignment:
Q  1036 attaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggcaaagtatagctgccattggcgagaac 1135  Q
    ||||||||||||||||||||||| ||| ||||| |||||||| ||||||||| |||| ||||||||||||||||||||||||||||  ||||| ||||||    
T  33351530 attaggagagcttgctcttctagggcatccttt-attaaggacgacagtgttgtagtgaaagacttggtgaggcaaagtatagctggtattggagagaac 33351432  T
Q  1136 attactgtgcggcgttttgttcggttcactct 1167  Q
    ||||  | ||||||||||||||||||||||||    
T  33351431 attaaagcgcggcgttttgttcggttcactct 33351400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 680 - 852
Target Start/End: Complemental strand, 33279139 - 33278972
Alignment:
Q  680 catgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattc 779  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||| |    || | || |||||||||| | |||||||||||    
T  33279139 catgaaaaggcgcaagcataccttagaaaaa-gggtctcttatcagctgacaagaaatccggca----agctactaaaggaagaattggtacatacattc 33279045  T
Q  780 acgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 852  Q
    ||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  33279044 acgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 33278972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 75; E-Value: 8e-34
Query Start/End: Original strand, 494 - 679
Target Start/End: Original strand, 24631975 - 24632161
Alignment:
Q  494 atagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctgttcacct 593  Q
    ||||||||| |||||||| || ||||||||| ||||||||| |||  |||||||| |||  |||||||||| | |||||||||||| | | ||||||||     
T  24631975 atagcttatgcataagcacttatatgataagcgtttatcttataatatttaattaagttgcttatccaaacgaggtcttagttttccaacttgttcacca 24632074  T
Q  594 atctttgaattcttacataaggtttgtaatttttaaatgtctattctg-tcccctttgaattgcagcaactatatcaccaacacttg 679  Q
    |||||||||||| |||||||| ||| ||||| |||||||||| ||||| |||  |||| |||||||||||| |||||||| ||||||    
T  24632075 atctttgaattcctacataagatttctaattgttaaatgtctgttctgctcctgtttggattgcagcaactttatcaccagcacttg 24632161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 75; E-Value: 8e-34
Query Start/End: Original strand, 1011 - 1121
Target Start/End: Complemental strand, 33292912 - 33292802
Alignment:
Q  1011 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 1110  Q
    ||||||||||||||||||||||||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||||   | |||||||||| ||||||    
T  33292912 ttgttgagggaagaatctcaaagaggttaggagggctttctcttatagagcagcctttcattaaggatgacagtgtttctttgaaagacttggagaggca 33292813  T
Q  1111 aagtatagctg 1121  Q
    |||||||||||    
T  33292812 aagtatagctg 33292802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 1339 - 1450
Target Start/End: Complemental strand, 33414021 - 33413910
Alignment:
Q  1339 aggtctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcattgatctattcaaggatagacactctt 1438  Q
    |||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||| ||  | ||||| |||||||    
T  33414021 aggtttgaattgtttgtttcattaattcttgacatttgttacttatcatgtaaatgataataatcattaatcattgatctgtttgaagataggcactctt 33413922  T
Q  1439 tgattacagtat 1450  Q
    || ||| |||||    
T  33413921 tgcttatagtat 33413910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 65; E-Value: 7e-28
Query Start/End: Original strand, 682 - 786
Target Start/End: Complemental strand, 33293194 - 33293090
Alignment:
Q  682 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 781  Q
    |||||||| | |||||||||||||||||||||||||||||| |||||| ||||||||| |||||| ||  |||||||||||||| | |||||||||||||    
T  33293194 tgaaaaggtgaaagcatacctcagaaaaaagggtctctcattcgctgataagaaatccagaagactagcagctgaaggaagaattggtacatacattcac 33293095  T
Q  782 gattc 786  Q
    |||||    
T  33293094 gattc 33293090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 60; E-Value: 7e-25
Query Start/End: Original strand, 1050 - 1153
Target Start/End: Complemental strand, 33258170 - 33258067
Alignment:
Q  1050 ctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggcaaagtatagctgccattggcgagaacattactgtgcggcg 1149  Q
    ||||||||||| ||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||| |||| |||||| |||||  ||| ||||    
T  33258170 ctcttctagagaagcctttcattaaggatgacagtgtttcagtgaaaaacttggtgaggcgaagtatagctggcatttgcgagaccattaaagtgtggcg 33258071  T
Q  1150 tttt 1153  Q
    ||||    
T  33258070 tttt 33258067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 845 - 935
Target Start/End: Complemental strand, 33293078 - 33292988
Alignment:
Q  845 aaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaacca 935  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||  |||||||    
T  33293078 aaattcaaggagttggttaatgatcttgcaatgcaagttgctgctattcttcaggttcagtttgtatctattgaagatattctcaaaacca 33292988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 1193 - 1349
Target Start/End: Complemental strand, 33414254 - 33414090
Alignment:
Q  1193 gttttcaagaaaagtatttgttgcattttcataggaagaagtatacaacagagtgagatcaattttgaaaacagaaa---------tcataataaccaaa 1283  Q
    |||||||||| ||||| | ||||||||||||||||||||||||| |  |||||||||| |||||||| |||||||||         ||||||||||||||    
T  33414254 gttttcaagagaagtaatcgttgcattttcataggaagaagtatgcggcagagtgagaccaattttg-aaacagaaatctgcttcttcataataaccaaa 33414156  T
Q  1284 tgttgattagacgccaatacattttactgatatgtatctctatcgaggatagatgaggtctgaatt 1349  Q
    |||||||||| |||  | || |||||||||| ||||||| ||| ||||||| |||||| |||||||    
T  33414155 tgttgattaggcgcggacacgttttactgatctgtatctgtattgaggatacatgaggactgaatt 33414090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 1015 - 1087
Target Start/End: Complemental strand, 33269427 - 33269355
Alignment:
Q  1015 tgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgtt 1087  Q
    |||||||| |||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  33269427 tgagggaaaaatctcaaagaggttaggagagcttgctcttctagagtagccttttattaaggatgacagtgtt 33269355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 55; E-Value: 7e-22
Query Start/End: Original strand, 453 - 635
Target Start/End: Complemental strand, 9165418 - 9165228
Alignment:
Q  453 tataggaaaacagtatgacttcatttta--tcttgctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattagg 550  Q
    |||||||||||||||||||||||| |||  | ||| ||||||||||||||||||||||| | || |||| ||||   ||||||| |||||||||||||||    
T  9165418 tataggaaaacagtatgacttcatcttaccttttgttataaaaatagcttatacataagtacttatatg-taagcacttatcttataagctttaattagg 9165320  T
Q  551 ttatttatccaaac-------taagtcttagttttctagcctgttcacctatctttgaattcttacataaggtttgtaatttttaaatgtct 635  Q
       |||||||||||       ||  || ||| |||  |||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||    
T  9165319 gcgtttatccaaacaaggtcatagctcataggtttgcagcctgttcacctatctttgaatttttacataagatttctaattgttaaatgtct 9165228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 55; E-Value: 7e-22
Query Start/End: Original strand, 1339 - 1421
Target Start/End: Complemental strand, 33351120 - 33351038
Alignment:
Q  1339 aggtctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcattgatctatt 1421  Q
    |||| ||||||||||||||||||||||||| |||||||||||| ||  |||||| |||||||||||| |||||||||||||||    
T  33351120 aggtttgaattgtttgtttcattaattcttgacatttgttactactattgtaaaggataataatcattaatcattgatctatt 33351038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 26 - 155
Target Start/End: Complemental strand, 33385837 - 33385707
Alignment:
Q  26 agtacaagttgaagatgaagaagttgcaattgcatccgaga-caaacaacaacttatctaattctaatggacaaaccggcattacttcttcagacaaagg 124  Q
    |||||||||||||| ||||||||||||||||||||   | | ||||||||| | ||||||| ||||||||||||||||| |||||  | |||||  ||||    
T  33385837 agtacaagttgaaggtgaagaagttgcaattgcattaaaaaacaaacaacagcgtatctaactctaatggacaaaccggaattacagcgtcagatgaagg 33385738  T
Q  125 ctcgagtaatggtttcaatttcatcttattt 155  Q
    || ||| || |||| ||||||||||||||||    
T  33385737 cttgagcaaaggttgcaatttcatcttattt 33385707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 1181 - 1319
Target Start/End: Complemental strand, 33351363 - 33351212
Alignment:
Q  1181 atagcttaaaaagttttcaagaaaagtatttgt---tgcattttcataggaagaagtatacaacagagtgagatcaa-ttttgaaaacagaaa------- 1269  Q
    |||||||| || | |||||||| ||||||||||   ||||||||||||||||||||||| |  | |||||||||||| |||||||||||||||           
T  33351363 atagcttacaacgctttcaagacaagtatttgtctttgcattttcataggaagaagtatgctgcggagtgagatcaatttttgaaaacagaaatcttgtt 33351264  T
Q  1270 --tcataataaccaaatgttgattagacgccaatacattttactgatatgta 1319  Q
      |||||||||||||||||||||||| |||  | ||||||||||||| ||||    
T  33351263 cttcataataaccaaatgttgattaggcgcggacacattttactgatctgta 33351212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 45; E-Value: 6e-16
Query Start/End: Original strand, 725 - 849
Target Start/End: Complemental strand, 33280482 - 33280358
Alignment:
Q  725 gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 824  Q
    |||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |    
T  33280482 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 33280383  T
Q  825 actttatcggtagaagtgagaaatt 849  Q
    ||||| | || ||||||||||||||    
T  33280382 acttttttggcagaagtgagaaatt 33280358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 442
Target Start/End: Original strand, 24631864 - 24631970
Alignment:
Q  336 atattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaa 435  Q
    |||| ||||||||||| ||| ||| |||||||| |||||||||||  |||| ||||||| ||||| |||||| |||||||||||  | | ||| ||||||    
T  24631864 atataagcacttgtgaaactatttggaagagtttatggaaacaactcatgatatgtccataaaagctgtttttagcttatttccaaaagctgtttagaaa 24631963  T
Q  436 agcttat 442  Q
    |||||||    
T  24631964 agcttat 24631970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 450 - 524
Target Start/End: Original strand, 29274300 - 29274376
Alignment:
Q  450 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataag 524  Q
    ||||||| ||||||| | |||||| ||||||||||  |||||| |||||||||||||||||||| || |||||||||    
T  29274300 gcttatatgaaaacaatttgactttattttatcttttgctatagaaatagcttatacataagcatttctatgataag 29274376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 33281376 - 33281320
Alignment:
Q  41 tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac 100  Q
    |||||| ||||||||||||||||||||||||| ||   ||||||||||||||||||||||    
T  33281376 tgaagaggttgcaattgcatccgagacaaacagca---tatctaattctaatggacaaac 33281320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1037 - 1077
Target Start/End: Original strand, 31567428 - 31567468
Alignment:
Q  1037 ttaggagagcttgctcttctagagcagcctttcattaagga 1077  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  31567428 ttaggagagctttctcttctagagcagcctttcattaagga 31567468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 682 - 728
Target Start/End: Original strand, 28873045 - 28873091
Alignment:
Q  682 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctg 728  Q
    |||||||||| |||||||||||||| |||||||||||||||| ||||    
T  28873045 tgaaaaggcgtaagcatacctcagataaaagggtctctcatctgctg 28873091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 33416592 - 33416538
Alignment:
Q  29 acaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatct 83  Q
    |||||||||||||||||  |||||||||||||| || ||||||| ||||||||||    
T  33416592 acaagttgaagatgaagcggttgcaattgcatctgaaacaaacagcaacttatct 33416538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 33302003 - 33301947
Alignment:
Q  41 tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac 100  Q
    |||||| ||||| ||||||||||||||||||| ||   ||||||||||||||||||||||    
T  33302003 tgaagaggttgctattgcatccgagacaaacatca---tatctaattctaatggacaaac 33301947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 419
Target Start/End: Original strand, 281808 - 281881
Alignment:
Q  344 acttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 419  Q
    |||||||||||||||| | |||| |||||||| ||||  ||||||||||   | ||||||||||||||||||||||    
T  281808 acttgtgagactgtttgggagagctaatggaagcaacttatgacatgtc--tataagttgttttcagcttatttcc 281881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 593 - 634
Target Start/End: Complemental strand, 33282282 - 33282241
Alignment:
Q  593 tatctttgaattcttacataaggtttgtaatttttaaatgtc 634  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33282282 tatcgttgaattcttacataagatttctaatttttaaatgtc 33282241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 593 - 634
Target Start/End: Complemental strand, 33398083 - 33398042
Alignment:
Q  593 tatctttgaattcttacataaggtttgtaatttttaaatgtc 634  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33398083 tatcgttgaattcttacataagatttataatttttaaatgtc 33398042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 593 - 634
Target Start/End: Complemental strand, 33408993 - 33408952
Alignment:
Q  593 tatctttgaattcttacataaggtttgtaatttttaaatgtc 634  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33408993 tatcgttgaattcttacataagatttataatttttaaatgtc 33408952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1474 - 1519
Target Start/End: Complemental strand, 33413867 - 33413822
Alignment:
Q  1474 ataagttatgcatatatctaaaaagtgaaagcttaaaggaagcgat 1519  Q
    ||||||||||| ||||||||| ||||| ||||||||||| ||||||    
T  33413867 ataagttatgcgtatatctaagaagtggaagcttaaagggagcgat 33413822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 4e-60; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 4e-60
Query Start/End: Original strand, 682 - 903
Target Start/End: Original strand, 17447760 - 17447982
Alignment:
Q  682 tgaaaaggcgcaagcatacctcagaaaaaaggg-tctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattca 780  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||  |  |||||||||||||||| ||||||||||||    
T  17447760 tgaaaaggcgcaagcatacctcagaaaaaaggggtctctcatccgctgataagaaatccggaagactggcagctgaaggaagaatcggtacatacattca 17447859  T
Q  781 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 880  Q
    |||| ||| |||  ||| |||||||||| |||| | |||||| |||||| | || ||||| |||| |||||||||||| ||| |||||||||||||||||    
T  17447860 cgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaa 17447959  T
Q  881 gttgctgcttgtccacaggttca 903  Q
    || ||||||| ||||||||||||    
T  17447960 gtggctgcttttccacaggttca 17447982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 1011 - 1177
Target Start/End: Original strand, 17445747 - 17445910
Alignment:
Q  1011 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 1110  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| | |||||||||||    
T  17445747 ttgtcgagggaaggatctcaaagaggttaggagagcttgctcttctagagcagcctttcattaaggatgacagcgtttcagtgaaatatttggtgaggca 17445846  T
Q  1111 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactcttggagaaaca 1177  Q
    |||||||||||| ||||| |||    |||  ||||||||||||||| |||||||||  |||||||||    
T  17445847 aagtatagctgctattggagag---tttaaagtgcggcgttttgttaggttcactcccggagaaaca 17445910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1195 - 1271
Target Start/End: Original strand, 17445951 - 17446026
Alignment:
Q  1195 tttcaagaaaagtatttgttgcattttcataggaagaagtatacaacagagtgagatcaattttgaaaacagaaatc 1271  Q
    |||||||| ||||||||||||||||||||||||||||||||| |  ||||||||||||||||||| |||||||||||    
T  17445951 tttcaagacaagtatttgttgcattttcataggaagaagtatgcggcagagtgagatcaattttg-aaacagaaatc 17446026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 1339 - 1413
Target Start/End: Original strand, 17446159 - 17446233
Alignment:
Q  1339 aggtctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcatt 1413  Q
    |||| |||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||||||| |||||||    
T  17446159 aggtttgaattgtttgtttgattaactcttgatatttgttacttctcatgtaaatgataataatcattaatcatt 17446233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 17443374 - 17443503
Alignment:
Q  29 acaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttcagacaaaggctcg 128  Q
    ||||||||||  ||||||||||||||||||||  || ||||||||   | ||||||| ||||||||||||||| |||||||  |||||||  |||||| |    
T  17443374 acaagttgaacgtgaagaagttgcaattgcatttgaaacaaacaatggcgtatctaactctaatggacaaaccagcattacagcttcagatgaaggcttg 17443473  T
Q  129 agtaatggtttcaatttcatcttatttgct 158  Q
    |  || |||| |||||||||||||||||||    
T  17443474 accaaaggttgcaatttcatcttatttgct 17443503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 874 - 946
Target Start/End: Original strand, 17445607 - 17445679
Alignment:
Q  874 aatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 946  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||  |||||| ||||| ||||    
T  17445607 aatgcaagttgatgcttgtccacatgttcagtttgtatctattgaagatattcccgaaaccattgtgaagaag 17445679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 378
Target Start/End: Original strand, 17443537 - 17443602
Alignment:
Q  313 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaaca 378  Q
    |||||||||||||||||| | | |||| ||||||||||||||||||| |||||||| |||||||||    
T  17443537 gatgtatttgaacttatatactgatataagcacttgtgagactgtttggaagagtttatggaaaca 17443602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 531
Target Start/End: Complemental strand, 34339122 - 34339039
Alignment:
Q  450 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 531  Q
    ||||||| ||||||||| |||||| ||||||||||  |||||| ||| || ||||||||||||| || ||||||||||||||||    
T  34339122 gcttatacgaaaacagtctgactttattttatctttagctatagaaaaagtttatacataagcacttatatgataagtgtttat 34339039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 483 - 523
Target Start/End: Complemental strand, 3102657 - 3102617
Alignment:
Q  483 ttgctataaaaatagcttatacataagcaattttatgataa 523  Q
    ||||||||||||||||||||||||||||| || ||||||||    
T  3102657 ttgctataaaaatagcttatacataagcagttatatgataa 3102617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 418
Target Start/End: Original strand, 14299588 - 14299663
Alignment:
Q  341 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttc 418  Q
    |||||||| | |||||||| |||||||| |||||||||||  ||||||| |||| | |  ||||||||||||||||||    
T  14299588 agcacttgagggactgtttggaagagtttatggaaacaacttatgacatatccataca--ttgttttcagcttatttc 14299663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 450 - 511
Target Start/End: Original strand, 7103554 - 7103615
Alignment:
Q  450 gcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagca 511  Q
    |||||||  |||||||| |||||| ||||||||||| |||||| |||| || ||||||||||    
T  7103554 gcttatattaaaacagtttgactttattttatcttgttataaatatagtttctacataagca 7103615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 102; Significance: 6e-50; HSPs: 8)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 102; E-Value: 6e-50
Query Start/End: Original strand, 682 - 909
Target Start/End: Complemental strand, 2537 - 2308
Alignment:
Q  682 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattca 780  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || ||     
T  2537 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 2438  T
Q  781 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 880  Q
    ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||| ||| | |||||||||||||||    
T  2437 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 2338  T
Q  881 gttgctgctt-gtccacaggttcagtttgt 909  Q
    || |||  || |||||||||||||||||||    
T  2337 gtagctttttggtccacaggttcagtttgt 2308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 85; E-Value: 8e-40
Query Start/End: Original strand, 313 - 549
Target Start/End: Complemental strand, 4047 - 3802
Alignment:
Q  313 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagct 412  Q
    |||||||||||||||||| | | |||| ||||||||||||||||||| |||||||| ||||||||  |  |||||||||||| ||||| ||||||||||     
T  4047 gatgtatttgaacttatatattgatataagcacttgtgagactgtttggaagagtttatggaaacggctcatgacatgtccataaaagctgttttcagcc 3948  T
Q  413 tatttccgtatgttgtctagaaaagcttatgaaaatcgct-------tataggaaaacagtatgacttcattttatc--ttgctataaaaatagcttata 503  Q
      ||| | |||  ||||||||||||||||||||||| |||       ||||||||||||||||||||||| ||||||  ||| ||||||||||||||| |    
T  3947 attttacatatactgtctagaaaagcttatgaaaatagcttatagcatataggaaaacagtatgacttcagtttatcttttgttataaaaatagcttaca 3848  T
Q  504 cataagcaattttatgataagtgtttatcttgtaagctttaattag 549  Q
    |||||||| || ||||  ||| | ||||||| ||||||| ||||||    
T  3847 cataagcacttatatgtaaagcgcttatcttataagcttgaattag 3802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 680 - 852
Target Start/End: Original strand, 15114 - 15281
Alignment:
Q  680 catgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattc 779  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||| |    || | || |||||||||| | |||||||||||    
T  15114 catgaaaaggcgcaagcataccttagaaaaa-gggtctcttatcagctgacaagaaatccggca----agctactaaaggaagaattggtacatacattc 15208  T
Q  780 acgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 852  Q
    ||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  15209 acgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 15281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 60; E-Value: 7e-25
Query Start/End: Original strand, 1050 - 1153
Target Start/End: Complemental strand, 2291 - 2188
Alignment:
Q  1050 ctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggcaaagtatagctgccattggcgagaacattactgtgcggcg 1149  Q
    ||||||||||| ||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||| |||| |||||| |||||  ||| ||||    
T  2291 ctcttctagagaagcctttcattaaggatgacagtgtttcagtgaaaaacttggtgaggcgaagtatagctggcatttgcgagaccattaaagtgtggcg 2192  T
Q  1150 tttt 1153  Q
    ||||    
T  2191 tttt 2188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #5
Raw Score: 45; E-Value: 6e-16
Query Start/End: Original strand, 725 - 849
Target Start/End: Original strand, 13771 - 13895
Alignment:
Q  725 gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 824  Q
    |||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |    
T  13771 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 13870  T
Q  825 actttatcggtagaagtgagaaatt 849  Q
    ||||| | || ||||||||||||||    
T  13871 acttttttggcagaagtgagaaatt 13895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 593 - 679
Target Start/End: Complemental strand, 3791 - 3704
Alignment:
Q  593 tatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 679  Q
    |||||||||||||||||||||| ||| || || |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  3791 tatctttgaattcttacataagatttatagttgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 3704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #7
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 12876 - 12932
Alignment:
Q  41 tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac 100  Q
    |||||| ||||||||||||||||||||||||| ||   ||||||||||||||||||||||    
T  12876 tgaagaggttgcaattgcatccgagacaaacagca---tatctaattctaatggacaaac 12932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #8
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 593 - 634
Target Start/End: Original strand, 11970 - 12011
Alignment:
Q  593 tatctttgaattcttacataaggtttgtaatttttaaatgtc 634  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  11970 tatcgttgaattcttacataagatttctaatttttaaatgtc 12011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 9e-43; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 9e-43
Query Start/End: Original strand, 121 - 275
Target Start/End: Original strand, 30653203 - 30653360
Alignment:
Q  121 aaggctcgagtaatggtttcaatttcatcttatttgc----tgtttctattctaatttttctacatctaatagaagtaaatatgttagacagatttgaat 216  Q
    ||||||||||||| ||||  |||||||||||||||||    |||||||||||||||||||| |||||||| | |||||| |||||||||||||||||||     
T  30653203 aaggctcgagtaaaggttaaaatttcatcttatttgcgtcatgtttctattctaatttttcaacatctaaca-aagtaattatgttagacagatttgaac 30653301  T
Q  217 ttatacatgtatttcaatttttacatgtaaaagagaaaaaatgaattatacttccattt 275  Q
    |||||||||| ||||  ||||||||||||||||||||||||| ||||||||||||||||    
T  30653302 ttatacatgtctttcggtttttacatgtaaaagagaaaaaataaattatacttccattt 30653360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 524
Target Start/End: Complemental strand, 11684468 - 11684346
Alignment:
Q  402 tgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagctta 501  Q
    |||||||| |||||||||||| | | || || | ||||||||||||| ||||||| ||||||||| | |||   || ||| ||| |||||||||||||||    
T  11684468 tgttttcaacttatttccgtaagctctccagcatagcttatgaaaatagcttatatgaaaacagtttcactattttatattttgttataaaaatagctta 11684369  T
Q  502 tacataagcaattttatgataag 524  Q
    ||||| |||| || |||||||||    
T  11684368 tacattagcacttatatgataag 11684346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 383 - 448
Target Start/End: Original strand, 30653373 - 30653438
Alignment:
Q  383 atgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaat 448  Q
    ||||||||| || ||||| |||||||||||||||||| || | |||||||||||||||||||||||    
T  30653373 atgacatgttcataaaagctgttttcagcttatttccataagctgtctagaaaagcttatgaaaat 30653438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 450 - 531
Target Start/End: Original strand, 32059660 - 32059742
Alignment:
Q  450 gcttataggaaaacagtatgacttcattttatctt-gctataaaaatagcttatacataagcaattttatgataagtgtttat 531  Q
    ||||||| ||||||||| |||||| |||||||||| | || ||||| |||||||||||||||| || |||||||||| |||||    
T  32059660 gcttatatgaaaacagtttgactttattttatcttagttacaaaaacagcttatacataagcacttatatgataagtatttat 32059742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 487 - 531
Target Start/End: Complemental strand, 10391313 - 10391269
Alignment:
Q  487 tataaaaatagcttatacataagcaattttatgataagtgtttat 531  Q
    |||||||||||||||||| |||||| || ||||||||||||||||    
T  10391313 tataaaaatagcttatacgtaagcacttatatgataagtgtttat 10391269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 394
Target Start/End: Complemental strand, 11457209 - 11457158
Alignment:
Q  343 cacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtcca 394  Q
    ||||||||||||||||| |||||| | |||||||||||  ||||||||||||    
T  11457209 cacttgtgagactgttttgaagagcttatggaaacaacttatgacatgtcca 11457158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 492 - 531
Target Start/End: Original strand, 29115328 - 29115367
Alignment:
Q  492 aaatagcttatacataagcaattttatgataagtgtttat 531  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  29115328 aaatagcttatacataagcacttttatgataaatgtttat 29115367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 341 - 419
Target Start/End: Original strand, 13000381 - 13000457
Alignment:
Q  341 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 419  Q
    ||||||||||||||| |||  ||||||| |||| ||||||  |||||||||||||  ||||||||||||||||||||||    
T  13000381 agcacttgtgagactatttgcaagagtttatggtaacaacttatgacatgtccac--aagttgttttcagcttatttcc 13000457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 458 - 526
Target Start/End: Complemental strand, 26717246 - 26717178
Alignment:
Q  458 gaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagcaattttatgataagtg 526  Q
    ||||| ||| |||||| ||||||||||| ||||||| |||||||| || ||||| || |||||||||||    
T  26717246 gaaaatagtttgactttattttatcttgttataaaattagcttattcagaagcacttatatgataagtg 26717178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 522
Target Start/End: Complemental strand, 5290649 - 5290566
Alignment:
Q  436 agcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagcaattttatgata 522  Q
    |||||||||| || ||||| | ||||||||| |||||  ||||||| ||| |||| |||||||||||||||||||| || |||||||    
T  5290649 agcttatgaatatagcttacatgaaaacagtttgact--attttat-ttgttatagaaatagcttatacataagcacttgtatgata 5290566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 468 - 531
Target Start/End: Original strand, 26716527 - 26716590
Alignment:
Q  468 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgataagtgtttat 531  Q
    |||||| |||| |||||| |||| || ||||||||||||||||| || ||| ||||||||||||    
T  26716527 tgactttatttaatcttgttatagaagtagcttatacataagcacttatataataagtgtttat 26716590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 419
Target Start/End: Original strand, 30191098 - 30191174
Alignment:
Q  341 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 419  Q
    ||||||||| ||||||||| | |||| | |||||||||||  |||||||||   ||||| |||||||||||||||||||    
T  30191098 agcacttgttagactgtttgggagagcttatggaaacaacttatgacatgt--tcaaaacttgttttcagcttatttcc 30191174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 398 - 484
Target Start/End: Original strand, 10079082 - 10079168
Alignment:
Q  398 aagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatctt 484  Q
    |||||||||| ||||| ||||| ||   | || |||| |||| |||||||  ||||||| ||||||||| |||||||||||||||||    
T  10079082 aagttgttttaagcttctttccataaactttccagaatagctcatgaaaacagcttatacgaaaacagtttgacttcattttatctt 10079168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 447
Target Start/End: Complemental strand, 30389157 - 30389108
Alignment:
Q  398 aagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaa 447  Q
    |||||||||||||||||||| | || ||| ||||| ||||||||||||||    
T  30389157 aagttgttttcagcttattttcataagttctctaggaaagcttatgaaaa 30389108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 450 - 524
Target Start/End: Original strand, 34788498 - 34788574
Alignment:
Q  450 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataag 524  Q
    ||||||| | ||||||| |||||| ||||||||||  |  ||||||||||||||||| |||||| || |||||||||    
T  34788498 gcttatatggaaacagtttgactttattttatctttggtcataaaaatagcttatacgtaagcatttatatgataag 34788574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 343 - 419
Target Start/End: Complemental strand, 43115167 - 43115093
Alignment:
Q  343 cacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 419  Q
    ||||||||||| ||||| |||||||| |||||||||||  ||||||||||  || || |||||||||||||||||||    
T  43115167 cacttgtgagattgtttggaagagtttatggaaacaacttatgacatgtc--cataacttgttttcagcttatttcc 43115093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 453 - 531
Target Start/End: Complemental strand, 38462277 - 38462197
Alignment:
Q  453 tataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 531  Q
    |||| ||||||||| |||||| ||||||||||  | |||| |||||||||||| |||| || || ||||||||||||||||    
T  38462277 tatatgaaaacagtttgactttattttatcttttggtatagaaatagcttataaataaacacttatatgataagtgtttat 38462197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 451 - 524
Target Start/End: Complemental strand, 22232824 - 22232749
Alignment:
Q  451 cttataggaaaacagtatgacttcattttatc--ttgctataaaaatagcttatacataagcaattttatgataag 524  Q
    |||||| ||||||||| |||||| ||||||||  ||| |||| ||||||||||||||| |||| || |||||||||    
T  22232824 cttatatgaaaacagtttgactttattttatcatttgttatataaatagcttatacatgagcatttatatgataag 22232749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 458 - 540
Target Start/End: Original strand, 3015928 - 3016011
Alignment:
Q  458 gaaaacagtatgacttcattttatc-ttgctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagc 540  Q
    ||||||||| ||||||||||||||| ||| |||| |||||  | ||||||||||| || ||| |||||||||||| || |||||    
T  3015928 gaaaacagtttgacttcattttatctttgttatagaaataattaatacataagcacttatataataagtgtttatgttataagc 3016011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 419
Target Start/End: Complemental strand, 37273247 - 37273171
Alignment:
Q  341 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 419  Q
    |||||| |||||||||||| | |||| | |||||||||||  ||||||||||  || |||||||||||| |||||||||    
T  37273247 agcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtc--cataagttgttttcaacttatttcc 37273171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 416
Target Start/End: Complemental strand, 24624344 - 24624250
Alignment:
Q  320 ttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatt 416  Q
    ||||||||||  | ||| |||||||||||| ||||||||| |||||| | ||| ||||| |  |||||||||||| |||   |||||||||||||||    
T  24624344 ttgaacttatctactcacattagcacttgtaagactgtttggaagagcttatgaaaacagcttatgacatgtccataaa--ctgttttcagcttatt 24624250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 456
Target Start/End: Complemental strand, 3468725 - 3468614
Alignment:
Q  343 cacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaaagcttat 442  Q
    ||||| ||||||||||||| ||||||  |||||||||| |||||||||||  || ||||||||| || |||||||||  | ||| ||||| | || ||||    
T  3468725 cacttttgagactgtttcggagagttgttggaaacaactaatgacatgtc--cataagttgtttccaacttatttccacaagttctctaggatagattat 3468628  T
Q  443 gaaaatcgcttata 456  Q
    |||||  |||||||    
T  3468627 gaaaaaagcttata 3468614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 450 - 531
Target Start/End: Original strand, 3610811 - 3610894
Alignment:
Q  450 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 531  Q
    |||||||  |||||||| || ||||||||||||||  | | || |||||||||||||||||||| || ||||| ||||||||||    
T  3610811 gcttataccaaaacagtttgccttcattttatcttttgttgtagaaatagcttatacataagcacttatatgacaagtgtttat 3610894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 402 - 523
Target Start/End: Original strand, 26935573 - 26935696
Alignment:
Q  402 tgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatc--ttgctataaaaatagct 499  Q
    |||||||||||||||||| || | | | ||||| || |||||||||| ||| ||| ||||||| | | || | ||||||||  ||| |||||||||||||    
T  26935573 tgttttcagcttatttccataagctctttagaatagattatgaaaatagctcatatgaaaacaatttaaccttattttatcatttgttataaaaatagct 26935672  T
Q  500 tatacataagcaattttatgataa 523  Q
    || ||| ||||| || ||||||||    
T  26935673 tacacaaaagcacttatatgataa 26935696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 487 - 565
Target Start/End: Original strand, 22388014 - 22388093
Alignment:
Q  487 tataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagc-tttaattaggttatttatccaaact 565  Q
    |||| ||||||||||| |||||||| ||  ||||||||||||||| || |||||  ||||||| ||| ||||||||||||    
T  22388014 tatagaaatagcttatccataagcacttaaatgataagtgtttatgttataagcgcttaattaagttgtttatccaaact 22388093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 468 - 521
Target Start/End: Complemental strand, 44207750 - 44207697
Alignment:
Q  468 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgat 521  Q
    |||||| ||||||||||||||||||||||||||| | ||||||| || ||||||    
T  44207750 tgactttattttatcttgctataaaaatagcttacatataagcacttgtatgat 44207697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 392
Target Start/End: Complemental strand, 15581367 - 15581316
Alignment:
Q  341 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtc 392  Q
    ||||||||||||| ||||| |||||| |||||||||||||  ||||||||||    
T  15581367 agcacttgtgagattgtttggaagagctaatggaaacaacttatgacatgtc 15581316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 436 - 509
Target Start/End: Original strand, 21335 - 21410
Alignment:
Q  436 agcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttg--ctataaaaatagcttatacataag 509  Q
    ||||||||||||  ||||||| ||||||| | | |||| ||||||||||   ||||||||||||||||||||||||    
T  21335 agcttatgaaaacagcttatacgaaaacaatttaactttattttatcttttcctataaaaatagcttatacataag 21410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 468 - 522
Target Start/End: Original strand, 32920489 - 32920543
Alignment:
Q  468 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgata 522  Q
    |||||| ||||||||||| |||||||||||||||| ||||| || || |||||||    
T  32920489 tgactttattttatcttgttataaaaatagcttatccataaacacttatatgata 32920543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 458 - 525
Target Start/End: Complemental strand, 47970309 - 47970240
Alignment:
Q  458 gaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagt 525  Q
    ||||| ||| |||||||||||||||||  | |||| |||||||||||||||||||| || ||||| ||||    
T  47970309 gaaaatagtttgacttcattttatcttttgttatagaaatagcttatacataagcacttatatgacaagt 47970240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 438 - 508
Target Start/End: Original strand, 55437345 - 55437415
Alignment:
Q  438 cttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataa 508  Q
    ||||||||||| ||||||| ||||| | | |||||| ||||||| ||| |||| |||||||||||| ||||    
T  55437345 cttatgaaaatagcttatatgaaaataatttgactttattttatattgttatagaaatagcttatagataa 55437415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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