View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13006_low_11 (Length: 576)
Name: NF13006_low_11
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_11 |
 | |
|
| [»] scaffold0312 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0312 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 560
Target Start/End: Complemental strand, 10901 - 10359
Alignment:
| Q |
18 |
agttgtatctgttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10901 |
agttgtatctgttttgtgacagtaaaacactgcataagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagat |
10802 |
T |
|
| Q |
118 |
gctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagact |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10801 |
gctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagact |
10702 |
T |
|
| Q |
218 |
ccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcaacgacggtgttctccacaatctgagcaccctttgaccctttctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
10701 |
ccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcactgatggtgttcttcacaatctgaacaccctttgaccctttctt |
10602 |
T |
|
| Q |
318 |
gatgtttaacttgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgcatttgaagtggtc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10601 |
gatgtttaacttgttgattatgtattccaccttgtttaatgaaaaaggtattgaattagcaacttggcgcggcaagaatgttgccgcatttgaagtggtc |
10502 |
T |
|
| Q |
418 |
ttagtgaattgcaagttcaattttgttccatgatgcaagtccttttccnnnnnnnngagtgctacatttggtttatcatgtaactgagtctcacttgcag |
517 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10501 |
ttagtgaattgcaagttcagttttgttccatgatgcaagtccttttccaaaaagaagagtgctacatttggtttatcatgtaactgagtctcacttgcag |
10402 |
T |
|
| Q |
518 |
cataattgtaactaaatggagaacgtccaactccaacattcat |
560 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10401 |
cataattgtaactaaatggagaacgtccaactccaacattcat |
10359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 17)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 560
Target Start/End: Original strand, 419670 - 420212
Alignment:
| Q |
18 |
agttgtatctgttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
419670 |
agttgtatctgttttgtgacagtaaaacactgcataagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagat |
419769 |
T |
|
| Q |
118 |
gctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagact |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
419770 |
gctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagact |
419869 |
T |
|
| Q |
218 |
ccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcaacgacggtgttctccacaatctgagcaccctttgaccctttctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
419870 |
ccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcactgatggtgttcttcacaatctgaacaccctttgaccctttctt |
419969 |
T |
|
| Q |
318 |
gatgtttaacttgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgcatttgaagtggtc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
419970 |
gatgtttaacttgttgattatgtattccaccttgtttaatgaaaaaggtattgaattagcaacttggcgcggcaagaatgttgccgcatttgaagtggtc |
420069 |
T |
|
| Q |
418 |
ttagtgaattgcaagttcaattttgttccatgatgcaagtccttttccnnnnnnnngagtgctacatttggtttatcatgtaactgagtctcacttgcag |
517 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
420070 |
ttagtgaattgcaagttcagttttgttccatgatgcaagtccttttccaaaaagaagagtgctacatttggtttatcatgtaactgagtctcacttgcag |
420169 |
T |
|
| Q |
518 |
cataattgtaactaaatggagaacgtccaactccaacattcat |
560 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
420170 |
cataattgtaactaaatggagaacgtccaactccaacattcat |
420212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 18 - 559
Target Start/End: Complemental strand, 975491 - 974950
Alignment:
| Q |
18 |
agttgtatctgttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
975491 |
agttgtatctgttttgtgacagtaaaacactgcataagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagat |
975392 |
T |
|
| Q |
118 |
gctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagact |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
975391 |
gctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtcgtgaaatcaaccatagact |
975292 |
T |
|
| Q |
218 |
ccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcaacgacggtgttctccacaatctgagcaccctttgaccctttctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
975291 |
ccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcactgatggtgttcttcacaatctgaacaccctttgaccctttctt |
975192 |
T |
|
| Q |
318 |
gatgtttaacttgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgcatttgaagtggtc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
975191 |
gatgtttaacttgttgattatgtattccatcttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggctgcatttgaagtggtc |
975092 |
T |
|
| Q |
418 |
ttagtgaattgcaagttcaattttgttccatgatgcaagtccttttccnnnnnnnngagtgctacatttggtttatcatgtaactgagtctcacttgcag |
517 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
975091 |
ttagagaattgcaagttcagttttgttccatgatgcaggtccttttccagaaagaagagtgctacatttggtttatcatgtaattgagtctcacttgcag |
974992 |
T |
|
| Q |
518 |
cataattgtaactaaatggagaacgtccaactccaacattca |
559 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
974991 |
cataattataaataaatggagaacgtccaactccaacattca |
974950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 16 - 455
Target Start/End: Complemental strand, 960571 - 960123
Alignment:
| Q |
16 |
tcagttgtatctgttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccag |
115 |
Q |
| |
|
||||||| ||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
960571 |
tcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgacacacaatagttttgttcttctcacccaatttcttcactcctt |
960472 |
T |
|
| Q |
116 |
atgctattgtatattgttgtaa---attactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccat |
212 |
Q |
| |
|
||||||| ||||||||| || |||||| | ||| | |||||||||||||||||| |||||||| || || ||||| ||| |||||||||||||||| |
|
|
| T |
960471 |
ttgctattacatattgttgcaaaccattactatttttatccacttctgttgaaacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccat |
960372 |
T |
|
| Q |
213 |
agactccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcaacgacggtgttctccacaatctgagcaccctttgaccct |
312 |
Q |
| |
|
||| |||||||| |||||||||| ||||||||| |||||||| || | ||||||||||| | || ||| |||||| | ||| ||||||| ||| |
|
|
| T |
960371 |
agattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttctcttcacaatttcagcttcctttgatcct |
960272 |
T |
|
| Q |
313 |
ttcttgatgtttaacttgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgc------at |
406 |
Q |
| |
|
| ||||||| |||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||| | ||||||||| | | | || |
|
|
| T |
960271 |
tccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaacttctctaggcaagaattttgttccattattat |
960172 |
T |
|
| Q |
407 |
ttgaagtggtcttagtgaattgcaagttcaattttgttccatgatgcaa |
455 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
960171 |
ttgaagttgtctctttgaattgcaagttcaattttgttccatgatgcaa |
960123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 18 - 527
Target Start/End: Complemental strand, 936688 - 936173
Alignment:
| Q |
18 |
agttgtatctgttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagat |
117 |
Q |
| |
|
||||| ||| ||||| ||||||||||| ||||| ||||||||| |||||||||||||||| |||||||| ||||| || ||||| |||||||| || | |
|
|
| T |
936688 |
agttgaatcagttttatgacagtaaaaaactgcataagggtaactctctttgtgacacactacagctttattcttttctcccaatttcttcacacctttt |
936589 |
T |
|
| Q |
118 |
gctattgtatattgttgtaaattact---ttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatag |
214 |
Q |
| |
|
|| ||| ||||| ||| || | ||| |||||| |||||||||||||||||||| || ||||| || |||||||| |||||||||||||||||||||| |
|
|
| T |
936588 |
gccattacatattcttgcaagtcactgctttcttttttcacttctgttgaaacagcttcgacattgtttccaagtttcgaagtagtgaaatcaaccatag |
936489 |
T |
|
| Q |
215 |
actccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcaacgacggtgttctccacaatctgagcaccctttgacccttt |
314 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||||||| || | |||||||||||| | ||||||| |||||| | || | | || |||| |
|
|
| T |
936488 |
attccaatgatgttacacaaagcttttcctctcctttgatgccattttcttcacactcacttattgtgttcttcacaatttcagattcttctgttccttc |
936389 |
T |
|
| Q |
315 |
cttgatgtttaacttgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtgg---ccgcatttgaa |
411 |
Q |
| |
|
||||||| ||| ||| | |||| ||| || ||| |||| ||||| ||||||||||||||||||| ||||||||| | | | |||||||| |
|
|
| T |
936388 |
cttgatggagaacaagttaaggatgttttcaactttgcttgaagaaaaaggtattgaattagcaacttctttaggcaagaattttgcatcatcatttgaa |
936289 |
T |
|
| Q |
412 |
gtggtcttagtgaattgcaagttcaattttgttccatgatgcaagtccttttccnnnnnnnngagtgctacatttggtttatcatgtaactgagtctcac |
511 |
Q |
| |
|
|||| || ||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| || |||| |
|
|
| T |
936288 |
ttggtttttgtgaattgcaagttcaactttgttccttgatgcaaatccttttctaagaagaaaagtgctacatttggtttatcatgtaactgtgtttcac |
936189 |
T |
|
| Q |
512 |
ttgcagcataattgta |
527 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
936188 |
ttgcagcataattgta |
936173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 16 - 382
Target Start/End: Complemental strand, 942610 - 942241
Alignment:
| Q |
16 |
tcagttgtatctgttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccag |
115 |
Q |
| |
|
||||||| ||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
942610 |
tcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgacacacaatagttttgttcttctcacccaatttcttcactcctt |
942511 |
T |
|
| Q |
116 |
atgctattgtatattgttgtaa---attactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccat |
212 |
Q |
| |
|
||||||| ||||||||| || |||||| | ||| | |||||||||||||||||| |||||||| || || ||||| ||| | |||||||||||||| |
|
|
| T |
942510 |
ttgctattacatattgttgcaaaccattactatttttatccacttctgttgaaacagcttcaacattgtttccgagtttcgaaatggtgaaatcaaccat |
942411 |
T |
|
| Q |
213 |
agactccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcaacgacggtgttctccacaatctgagcaccctttgaccct |
312 |
Q |
| |
|
||| |||||||| |||| ||||| ||||||||| |||||||| || | ||||||||||| | || ||| |||||| | ||| ||||||| ||| |
|
|
| T |
942410 |
agattccaatgaagttatacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttctcttcacaatttcagcttcctttgatcct |
942311 |
T |
|
| Q |
313 |
ttcttgatgtttaacttgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaactt |
382 |
Q |
| |
|
| ||||||| |||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
942310 |
tccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaactt |
942241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 16 - 382
Target Start/End: Complemental strand, 971880 - 971511
Alignment:
| Q |
16 |
tcagttgtatctgttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccag |
115 |
Q |
| |
|
||||||| ||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||| || |||||||| |
|
|
| T |
971880 |
tcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgacacacaatagttttgttcttctcacccaatttattcactcctt |
971781 |
T |
|
| Q |
116 |
atgctattgtatattgttgtaa---attactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccat |
212 |
Q |
| |
|
|||||| ||||||||| || |||||| | ||| | |||||||||||||||||| |||||||| || || ||||| ||| | |||||||||||||| |
|
|
| T |
971780 |
ttgctataacatattgttgcaaaccattactatttttatccacttctgttgaaacagcttcaacattgtttccgagtttcgaaatggtgaaatcaaccat |
971681 |
T |
|
| Q |
213 |
agactccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcaacgacggtgttctccacaatctgagcaccctttgaccct |
312 |
Q |
| |
|
||| |||||||| |||| ||||| ||||||||| |||||||| || | ||||||||||| | || ||| |||||| | ||| ||||||| ||| |
|
|
| T |
971680 |
agattccaatgaagttatacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttctcttcacaatttcagcttcctttgatcct |
971581 |
T |
|
| Q |
313 |
ttcttgatgtttaacttgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaactt |
382 |
Q |
| |
|
| ||||||| |||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
971580 |
tccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaactt |
971511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 949596 - 949230
Alignment:
| Q |
19 |
gttgtatctgttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagatg |
118 |
Q |
| |
|
|||| ||| ||||| ||||||||||| |||| ||||||||||||||||||||||||||||| || |||||||||||||||||| || |||||||| || |
|
|
| T |
949596 |
gttgaatcagttttatgacagtaaaaaactgtgtaagggtaattctctttgtgacacacaatagttttgttcttctcacccaatttattcactccttttg |
949497 |
T |
|
| Q |
119 |
ctattgtatattgttgtaa---attactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccataga |
215 |
Q |
| |
|
|||| ||||||||| || |||||| | ||| | ||||||||| |||| ||| |||||||| || || ||||| ||| ||||||||||||||||||| |
|
|
| T |
949496 |
ctataacatattgttgcaaaccattactatttttatccacttctgtggaaatagcttcaacattgtttccgagttttgaaatagtgaaatcaaccataga |
949397 |
T |
|
| Q |
216 |
ctccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcaacgacggtgttctccacaatctgagcaccctttgaccctttc |
315 |
Q |
| |
|
|||||||| |||||||||| ||||||||| |||||||| || | ||||||||||| | || ||| |||||| | ||| ||||||| |||| | |
|
|
| T |
949396 |
ttccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttctcttcacaatttcagcttcctttgatccttcc |
949297 |
T |
|
| Q |
316 |
ttgatgtttaacttgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaactt |
382 |
Q |
| |
|
|||||| |||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
949296 |
ttgatggaaaacttgttgagtatgttttccaatttgtttgatgaaaagggtatggaattagcaactt |
949230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 91 - 250
Target Start/End: Complemental strand, 924395 - 924236
Alignment:
| Q |
91 |
ttctcacccaacttcttcactccagatgctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtt |
190 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| |||||||||||| || |||||||||||||||||||||||||||||| |||||||| || ||||| | |
|
|
| T |
924395 |
ttctcacccaacttcttaactccttttgctattatatattgttgtatatcactttctttgttcacttctgttgaaacagcttcaacattgtttccaagct |
924296 |
T |
|
| Q |
191 |
tagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctt |
250 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
924295 |
tagaagtagtgaaatcaaccattgactctaatgatgttacacaactcttttcctctcctt |
924236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 91 - 250
Target Start/End: Complemental strand, 916344 - 916185
Alignment:
| Q |
91 |
ttctcacccaacttcttcactccagatgctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtt |
190 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||| ||||||||||| || ||||||||||||| |||||||||||||||| |||||||| || ||||| | |
|
|
| T |
916344 |
ttctcactcaacttcttaactccttttgctattatatattgttgtttatcactttctttgttcgcttctgttgaaacagcttcaacattgtttccaagct |
916245 |
T |
|
| Q |
191 |
tagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctt |
250 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||||||||||| |||||||||||||| |
|
|
| T |
916244 |
tagaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttcctctcctt |
916185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 909932 - 909699
Alignment:
| Q |
18 |
agttgtatctgttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagat |
117 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||| |||||||||||| |||||| |||||||| ||||||| | |||| ||||||||||| | |
|
|
| T |
909932 |
agttgcatctgttttgtgacagtaaaaaactgcataagggtaattccgtttgtggcacacaaccaaattgttct---ctcccattttcttcactccgttt |
909836 |
T |
|
| Q |
118 |
gctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagact |
217 |
Q |
| |
|
|||||| ||||||||||||| ||||||| || |||||||||||||||| |||||||| || ||||| || ||||||||||||||| |||||| | |
|
|
| T |
909835 |
gctattacatattgttgtaaaccactttctccatttacttctgttgaaacagtgtcaacattgtttccaagcttcaaagtagtgaaatcaatcatagatt |
909736 |
T |
|
| Q |
218 |
ccaatgatgttacacaaaccttttcctctcctttgat |
254 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
909735 |
ccaatgatgtcacacaaagcttttcctctcctttgat |
909699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 337 - 464
Target Start/End: Complemental strand, 924149 - 924022
Alignment:
| Q |
337 |
atgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgcatttgaagtggtcttagtgaattgcaagttca |
436 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||| ||||||||||||| || ||||||||||| || ||| | |||||| |||||||||| ||||| |
|
|
| T |
924149 |
atgttttccactttgtttgatgaaaatggtatggaattagcaacttcacgaggcaagaatgttgctccataatctgaggtctttgtgaattgcatgttca |
924050 |
T |
|
| Q |
437 |
attttgttccatgatgcaagtccttttc |
464 |
Q |
| |
|
||||||| |||| ||||||||||||||| |
|
|
| T |
924049 |
attttgtaccattatgcaagtccttttc |
924022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 455
Target Start/End: Complemental strand, 942208 - 942174
Alignment:
| Q |
421 |
gtgaattgcaagttcaattttgttccatgatgcaa |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
942208 |
gtgaattgcaagttcaattttgttccatgatgcaa |
942174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 455
Target Start/End: Complemental strand, 971478 - 971444
Alignment:
| Q |
421 |
gtgaattgcaagttcaattttgttccatgatgcaa |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
971478 |
gtgaattgcaagttcaattttgttccatgatgcaa |
971444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 455
Target Start/End: Complemental strand, 949183 - 949151
Alignment:
| Q |
423 |
gaattgcaagttcaattttgttccatgatgcaa |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
949183 |
gaattgcaagttcaattttgttccatgatgcaa |
949151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 465
Target Start/End: Complemental strand, 901895 - 901772
Alignment:
| Q |
342 |
ttccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgcatttgaagtggtcttagtgaattgcaagttcaatttt |
441 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||||||||||| || ||||| ||||| | ||| | |||||| ||||||||| |||||||||| |
|
|
| T |
901895 |
ttccactttgtttgatgaaaagggaatggaattagcaacttcacgaggcaaaaatgttacttcataatttgaggtctttttgaattgcatgttcaatttt |
901796 |
T |
|
| Q |
442 |
gttccatgatgcaagtccttttcc |
465 |
Q |
| |
|
|| ||| |||||||||| |||||| |
|
|
| T |
901795 |
gtaccaagatgcaagtctttttcc |
901772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 465
Target Start/End: Complemental strand, 909539 - 909488
Alignment:
| Q |
414 |
ggtcttagtgaattgcaagttcaattttgttccatgatgcaagtccttttcc |
465 |
Q |
| |
|
|||||| |||||||| | ||| |||||||| ||||||||||||||||||||| |
|
|
| T |
909539 |
ggtctttgtgaattgtatgttgaattttgtaccatgatgcaagtccttttcc |
909488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 464
Target Start/End: Complemental strand, 916098 - 915980
Alignment:
| Q |
337 |
atgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgcatttgaagtggtcttagtgaattgcaagttca |
436 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||| |||||||| |||| || ||||||||||| || | |||||| |||||||||| ||||| |
|
|
| T |
916098 |
atgttttccactttgtttgatgaaaatggtatggaattagcgacttcacgaggcaagaatgttgctcc---------ggtctttgtgaattgcatgttca |
916008 |
T |
|
| Q |
437 |
attttgttccatgatgcaagtccttttc |
464 |
Q |
| |
|
||||||| |||| |||||||||||||| |
|
|
| T |
916007 |
attttgtaccattgtgcaagtccttttc |
915980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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