View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_low_13 (Length: 535)
Name: NF13006_low_13
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 163 - 517
Target Start/End: Original strand, 28756730 - 28757078
Alignment:
| Q |
163 |
gtagaaaccgcatgattccataacagaggcatatattccaacaccactaattcgggcaaggcggcacaaattccagtgtggtggttactgggaaaatatt |
262 |
Q |
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| T |
28756730 |
gtagaaaccgcatgattccataacagaggcatatattccaacaccactaattccggcaaggcggcacaaattccagtgcggtggttactgggaaaatatt |
28756829 |
T |
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| Q |
263 |
gcgatcatnnnnnnnnnnnnnnnnnnnnctgtgtctttggtataggagatgatagttagtccttctatggtggtggtttttcgaaatatagcctatgtgg |
362 |
Q |
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| T |
28756830 |
gcgatcataaaaaaaaaagaaaaa----ctgtgtctttggcataggagatgatggttagtccttctatggtggtggtttttcgaaatatagcctatgtgg |
28756925 |
T |
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| Q |
363 |
tgttcaagatctaaaaaagaatatgataaattaatagtgcaaaataaaaagaaacaatggtttgttgatctatttggcagaaaacgtaaagtttgatgag |
462 |
Q |
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| T |
28756926 |
tgttcaagatctaaaaaagaatatgatgaattaaaagtgcaaaataaaa--aaacaatggtttgttgatctatttggcagaaaacgtaaagtttgatgag |
28757023 |
T |
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| Q |
463 |
aggattatattggtggtgaaggtgcggccaaccaagacaaaaaggcggtgattca |
517 |
Q |
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| T |
28757024 |
aggattatattggtggtgaaggtgcggccaaccaagacaaaacggcggtgattca |
28757078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 28756577 - 28756664
Alignment:
| Q |
10 |
attatactacagggagataaatgtttattaacccaaaattaccatgttatctttcta-caaaattgcagataatggatacgtgagggg |
96 |
Q |
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| T |
28756577 |
attatattagagggagataaatgtctattaacccaaaattactatgttatctttctaccaaaattgcagataatggatacgtgagggg |
28756664 |
T |
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