View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_low_14 (Length: 534)
Name: NF13006_low_14
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 13 - 518
Target Start/End: Complemental strand, 43562306 - 43561799
Alignment:
| Q |
13 |
aatatagttaactaagtcggttagatgattaatttagattacgttgaaatttacatagaattgaatta-ccatatctttaaacatgtgcctttg-gtgtg |
110 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||| ||||| |
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| T |
43562306 |
aatatagttaactcagtcggttagatgattaatttagattacgttgaaatttacatagaattgaattaaccataattttaaccatgtgtctttgtgtgtg |
43562207 |
T |
|
| Q |
111 |
acaagtgtacgaaaaagggtatagatgtatcgtcattattgatatgacaaaatattttctcgtataaaaagcaatttcaccaacactatttctcctcaac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43562206 |
acaagtgtacgaaaaagggtatagatgtatcgtcattattgatatgacaaaatattttctcgtataaaaagcaatttcaccaacactatttctcctcaac |
43562107 |
T |
|
| Q |
211 |
accttccatctcttatctctcaatctctttcccattctnnnnnnnnnnnnnnnnnnnnnnnnnctatttctcaccttcaaatccaaactcttcaaaacct |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43562106 |
accttccatctcttatctctcaatctctttcccattctaaaaaacaatgaaagaaataaaaaactatttctcaccttcaaatccaaactcttcaaaacct |
43562007 |
T |
|
| Q |
311 |
nnnnnnncagagacaaagaaacagagcaaggtgaagaaaaacagagactgcaacagccacccggtttatcacggcgttcgaatgcgaagctggggaaaat |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43562006 |
aaaaaaacagagacaaagaaacagagcaaggtgaagaaaaacagagactgcaacagccacccggtttatcacggcgttcgaatgcgaagctggggaaaat |
43561907 |
T |
|
| Q |
411 |
gggtatcagaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatgttgctgcttt |
510 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43561906 |
gggtatcggaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatgttgctgcttt |
43561807 |
T |
|
| Q |
511 |
gagtataa |
518 |
Q |
| |
|
|||||||| |
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|
| T |
43561806 |
gagtataa |
43561799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 506
Target Start/End: Complemental strand, 36077810 - 36077744
Alignment:
| Q |
440 |
aaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatgttgctg |
506 |
Q |
| |
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|||||| |||| ||||| ||||||||| |||| || ||||||||||||| ||| |||||||| |||| |
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| T |
36077810 |
aaatcaagaatatggctaggaacttaccctacaccagaaatggcagctatagcacatgatgtagctg |
36077744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 395 - 510
Target Start/End: Original strand, 4268648 - 4268763
Alignment:
| Q |
395 |
cgaagctggggaaaatgggtatcagaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgc |
494 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||| |||||||||||| |||||||||| ||||| | | | || || ||||||||||||||||| | |
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|
| T |
4268648 |
cgaaactggggaaaatgggtatctgaaatccgcgaaccacgcaaaaaatcaagaatctggctaggaacattctcaacaccagaaatggcagctagagcac |
4268747 |
T |
|
| Q |
495 |
atgatgttgctgcttt |
510 |
Q |
| |
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| ||||| || ||||| |
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|
| T |
4268748 |
acgatgtagcagcttt |
4268763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 437 - 510
Target Start/End: Complemental strand, 505615 - 505542
Alignment:
| Q |
437 |
aaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatgttgctgcttt |
510 |
Q |
| |
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||||||||| |||| ||||||||||| ||| |||| ||||||||||||||||||| |||||||| |||||||| |
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|
| T |
505615 |
aaaaaatcaagaatatggcttggaacataccctacagctgaaatggcagctagagcacatgatgtagctgcttt |
505542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 510
Target Start/End: Complemental strand, 16357926 - 16357817
Alignment:
| Q |
401 |
tggggaaaatgggtatcagaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatg |
500 |
Q |
| |
|
||||||||||||||||| ||||| || || || | || || ||| |||| ||||||||||| ||| |||| ||||||||||||||||||| ||||||| |
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| T |
16357926 |
tggggaaaatgggtatctgaaattcgtgagccaagaaagaagtcaagaatatggcttggaacataccctacagctgaaatggcagctagagctcatgatg |
16357827 |
T |
|
| Q |
501 |
ttgctgcttt |
510 |
Q |
| |
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| |||||||| |
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|
| T |
16357826 |
tagctgcttt |
16357817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 483
Target Start/End: Original strand, 33589193 - 33589286
Alignment:
| Q |
390 |
gaatgcgaagctggggaaaatgggtatcagaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggc |
483 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| ||||| || || ||| ||||||||||||||||| || ||||| |||||||||| |
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|
| T |
33589193 |
gaatgcgaacatggggaaaatgggtatccgaaatccgtgaaccacgaaagaaaagtcgaatctggcttggaacatatgctacggctgaaatggc |
33589286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 486
Target Start/End: Original strand, 33602312 - 33602408
Alignment:
| Q |
390 |
gaatgcgaagctggggaaaatgggtatcagaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagc |
486 |
Q |
| |
|
||||||||| |||||||||||||| || |||||||| ||||| || || ||| ||||||||||| ||||| | ||| || ||||||||||||| |
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|
| T |
33602312 |
gaatgcgaacatggggaaaatgggtttctgaaatccgagaaccacgaaagaaaaaccgaatctggctaggaacattcgcaaccgctgaaatggcagc |
33602408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 507
Target Start/End: Original strand, 71010 - 71116
Alignment:
| Q |
401 |
tggggaaaatgggtatcagaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatg |
500 |
Q |
| |
|
|||||||| ||||| || ||||||||||| || || || ||||| || || ||||| || |||| | | ||| |||||||||| |||||||||||||| | |
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| T |
71010 |
tggggaaagtgggtgtccgaaatccgcgagccacgtaagaaatcgcggatttggctaggcactttccccactgctgaaatggctgctagagcgcatgacg |
71109 |
T |
|
| Q |
501 |
ttgctgc |
507 |
Q |
| |
|
|||||| |
|
|
| T |
71110 |
ctgctgc |
71116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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