View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_low_15 (Length: 530)
Name: NF13006_low_15
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 8089134 - 8088752
Alignment:
| Q |
1 |
taacaatcaatcgttcgtttgtatcattttctattatcatttcaatacaaatctttcgatctaaacatgcatcgatgaaaacaacggaataaataaaacc |
100 |
Q |
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| T |
8089134 |
taacaatcaatcgttcgtttgtatcattttctattatcatttcaatacaaatctttcgatcttaacatgcatcgatgaaaacaacggaataaataaaacc |
8089035 |
T |
|
| Q |
101 |
tggtaagctgaagatgctgttccaaaaacaaaatcttctgggaaactgctttgattaagagaagttgttgactcaaacaaagccatgcaaaaagcaaggt |
200 |
Q |
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| T |
8089034 |
tggtaagctgaagatgctgttccaaaaacaaaatcttctgggaaactgctttgattaagagaagttgttgactcaaacaaagccatgcaaaaagcaaggt |
8088935 |
T |
|
| Q |
201 |
gaagaaggaccttaaaccacattgttccaatttgaaactttcttcaccttatgcatacataaataagaagattaaaagcttttatatttagaaagttaag |
300 |
Q |
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| T |
8088934 |
gaagaaggaccttaaaccacattgttccaatttgaaactttcttcaccttatgcatacataaataagaagattaaaagcttttatatttagaaagttaag |
8088835 |
T |
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| Q |
301 |
agattgtgttatagtaattgaagaaaagagacttggtcattaagaaatgaaaagacaaagnnnnnnnncaaatagaaaatgacaa |
385 |
Q |
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| T |
8088834 |
agattgtgttatagtaattgaagaaa--agacttggtcattaagagctgaaaagacaaaggaaaaaagcaaatagaaaatgacaa |
8088752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 402 - 505
Target Start/End: Complemental strand, 8088712 - 8088609
Alignment:
| Q |
402 |
gatgccatcttttacttgcgacggcaattagactctaagttagatgatacaagtggtagcatgtttaattaatacaaataaatacatgccccaagcctgc |
501 |
Q |
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| T |
8088712 |
gatgccatcttttacttgcgacggcaatttgattctaagttagatgatacaggtggtagaatgtttaatcaatacaaataaatgcatgccccaagcctgc |
8088613 |
T |
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| Q |
502 |
acaa |
505 |
Q |
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|||| |
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| T |
8088612 |
acaa |
8088609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 29462414 - 29462463
Alignment:
| Q |
98 |
acctggtaagctgaagatgctgttccaaaaacaaaatcttctgggaaact |
147 |
Q |
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| T |
29462414 |
acctggtaagctgatgatgctgttccaaaaataaaaccttctgggaaact |
29462463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 29420909 - 29420860
Alignment:
| Q |
98 |
acctggtaagctgaagatgctgttccaaaaacaaaatcttctgggaaact |
147 |
Q |
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|||||||||||||| || ||||||||||||| |||| ||||||||||||| |
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| T |
29420909 |
acctggtaagctgatgaagctgttccaaaaataaaaccttctgggaaact |
29420860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 7727654 - 7727586
Alignment:
| Q |
95 |
aaaacctggtaagctgaagatgctgttccaaaaacaaaatcttctgggaaactgctttgattaagagaa |
163 |
Q |
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|||||||||||||||||||| ||||||||||| | ||||| | ||| |||||||| | ||||||||| |
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| T |
7727654 |
aaaacctggtaagctgaagaagctgttccaaacaggaaatcatgtggaaaactgctacggttaagagaa |
7727586 |
T |
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