View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13006_low_17 (Length: 485)

Name: NF13006_low_17
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13006_low_17
NF13006_low_17
[»] chr4 (28 HSPs)
chr4 (1-159)||(27967926-27968085)
chr4 (166-337)||(27967335-27967508)
chr4 (351-476)||(27967223-27967348)
chr4 (64-252)||(35064962-35065149)
chr4 (173-278)||(33347143-33347248)
chr4 (175-252)||(16551966-16552041)
chr4 (162-252)||(32818369-32818459)
chr4 (60-117)||(49138968-49139025)
chr4 (159-252)||(53713560-53713653)
chr4 (196-279)||(4905855-4905938)
chr4 (173-251)||(52965854-52965932)
chr4 (164-249)||(50061630-50061715)
chr4 (208-252)||(21691211-21691255)
chr4 (61-117)||(21691353-21691409)
chr4 (173-264)||(41370000-41370088)
chr4 (57-117)||(50061768-50061828)
chr4 (164-260)||(53913568-53913664)
chr4 (164-259)||(9064229-9064324)
chr4 (216-279)||(31360928-31360991)
chr4 (210-253)||(32100336-32100379)
chr4 (201-252)||(39386668-39386719)
chr4 (162-236)||(30357508-30357582)
chr4 (182-243)||(47297985-47298045)
chr4 (60-117)||(54705524-54705581)
chr4 (208-252)||(4243429-4243473)
chr4 (164-252)||(8604621-8604709)
chr4 (60-120)||(33456269-33456329)
chr4 (69-113)||(46344968-46345012)
[»] chr1 (27 HSPs)
chr1 (172-316)||(7524119-7524263)
chr1 (175-264)||(34721827-34721916)
chr1 (173-273)||(1514350-1514450)
chr1 (162-249)||(7790644-7790731)
chr1 (173-250)||(11049257-11049334)
chr1 (173-252)||(44801592-44801671)
chr1 (164-249)||(3416078-3416163)
chr1 (164-309)||(28083831-28083975)
chr1 (173-252)||(30850398-30850477)
chr1 (176-249)||(30557514-30557585)
chr1 (164-249)||(38797631-38797716)
chr1 (134-252)||(6021779-6021890)
chr1 (221-312)||(11817256-11817347)
chr1 (162-239)||(50571280-50571357)
chr1 (164-252)||(3016160-3016248)
chr1 (57-117)||(36780250-36780310)
chr1 (173-252)||(10324937-10325016)
chr1 (173-252)||(32370030-32370109)
chr1 (162-249)||(40043426-40043512)
chr1 (164-234)||(34387710-34387780)
chr1 (219-301)||(34915119-34915201)
chr1 (60-117)||(14644592-14644649)
chr1 (60-117)||(15084726-15084783)
chr1 (60-117)||(28084021-28084078)
chr1 (215-312)||(35961417-35961514)
chr1 (161-241)||(30996037-30996117)
chr1 (208-252)||(47321906-47321950)
[»] chr7 (14 HSPs)
chr7 (173-312)||(40491585-40491724)
chr7 (209-309)||(45557408-45557508)
chr7 (162-248)||(41386818-41386904)
chr7 (162-310)||(38123607-38123755)
chr7 (159-309)||(27571855-27572005)
chr7 (192-300)||(25156226-25156334)
chr7 (219-261)||(32295237-32295279)
chr7 (175-261)||(44638435-44638523)
chr7 (53-117)||(45004873-45004937)
chr7 (159-252)||(40561757-40561850)
chr7 (186-242)||(45997707-45997764)
chr7 (186-278)||(4074261-4074353)
chr7 (206-274)||(9480586-9480653)
chr7 (217-309)||(17111896-17111988)
[»] chr5 (18 HSPs)
chr5 (162-252)||(42858104-42858194)
chr5 (164-252)||(6951304-6951392)
chr5 (176-264)||(28031161-28031248)
chr5 (164-247)||(14299328-14299411)
chr5 (207-252)||(10898762-10898807)
chr5 (206-314)||(38587126-38587234)
chr5 (164-248)||(38845441-38845525)
chr5 (60-115)||(18851217-18851272)
chr5 (164-249)||(9818732-9818818)
chr5 (173-263)||(22226224-22226314)
chr5 (164-281)||(31906257-31906374)
chr5 (208-313)||(34443017-34443122)
chr5 (60-117)||(38845644-38845701)
chr5 (164-252)||(18851081-18851169)
chr5 (195-253)||(8506704-8506762)
chr5 (208-258)||(28110431-28110481)
chr5 (183-251)||(5468790-5468859)
chr5 (88-159)||(43268422-43268491)
[»] chr8 (24 HSPs)
chr8 (175-281)||(32736471-32736577)
chr8 (176-312)||(26100085-26100221)
chr8 (176-309)||(16972006-16972139)
chr8 (173-312)||(32927899-32928038)
chr8 (207-312)||(32681243-32681348)
chr8 (192-252)||(38868769-38868829)
chr8 (162-252)||(15677814-15677905)
chr8 (164-251)||(38868496-38868583)
chr8 (162-260)||(37684401-37684499)
chr8 (187-252)||(13384653-13384718)
chr8 (229-298)||(18123289-18123358)
chr8 (195-264)||(40769354-40769423)
chr8 (164-249)||(44141052-44141137)
chr8 (173-248)||(4662906-4662981)
chr8 (173-260)||(32101080-32101167)
chr8 (177-252)||(35495001-35495076)
chr8 (206-312)||(7601890-7601995)
chr8 (195-252)||(5859062-5859119)
chr8 (60-117)||(10367896-10367953)
chr8 (175-251)||(32767396-32767472)
chr8 (57-117)||(44141190-44141250)
chr8 (162-252)||(32994241-32994331)
chr8 (215-260)||(2924826-2924871)
chr8 (56-112)||(7533692-7533748)
[»] chr2 (23 HSPs)
chr2 (211-297)||(16518823-16518909)
chr2 (162-263)||(26032023-26032124)
chr2 (173-260)||(10644610-10644697)
chr2 (164-253)||(3352074-3352163)
chr2 (164-264)||(42740975-42741074)
chr2 (54-117)||(30503098-30503161)
chr2 (208-251)||(33502279-33502322)
chr2 (214-264)||(7297059-7297109)
chr2 (179-261)||(11504052-11504133)
chr2 (173-239)||(31685981-31686047)
chr2 (208-312)||(11759798-11759902)
chr2 (208-252)||(33019155-33019199)
chr2 (173-228)||(2002718-2002773)
chr2 (177-252)||(13912798-13912873)
chr2 (173-252)||(42982551-42982630)
chr2 (158-249)||(45066434-45066525)
chr2 (177-239)||(4376018-4376079)
chr2 (222-260)||(9605242-9605280)
chr2 (215-260)||(7632818-7632863)
chr2 (208-253)||(32596033-32596078)
chr2 (60-117)||(33047685-33047742)
chr2 (208-253)||(44439296-44439341)
chr2 (209-249)||(39008968-39009008)
[»] chr6 (20 HSPs)
chr6 (60-294)||(5724587-5724820)
chr6 (159-253)||(26280598-26280692)
chr6 (159-260)||(4910901-4911002)
chr6 (134-246)||(25195818-25195930)
chr6 (185-260)||(25195357-25195432)
chr6 (162-252)||(957622-957712)
chr6 (162-264)||(3482042-3482144)
chr6 (208-295)||(8854962-8855048)
chr6 (51-117)||(4907902-4907968)
chr6 (60-120)||(1499761-1499821)
chr6 (208-252)||(17225894-17225938)
chr6 (219-318)||(3289798-3289896)
chr6 (162-252)||(4907959-4908048)
chr6 (208-253)||(1485144-1485189)
chr6 (215-264)||(7280539-7280588)
chr6 (208-281)||(8860546-8860619)
chr6 (215-247)||(2748043-2748075)
chr6 (173-253)||(6654088-6654168)
chr6 (208-260)||(34620928-34620980)
chr6 (208-260)||(34748365-34748417)
[»] chr3 (11 HSPs)
chr3 (192-253)||(54173313-54173374)
chr3 (162-246)||(25359579-25359663)
chr3 (173-253)||(52364058-52364138)
chr3 (208-258)||(4526174-4526224)
chr3 (178-252)||(32523339-32523413)
chr3 (219-312)||(31708178-31708271)
chr3 (164-251)||(42913052-42913139)
chr3 (60-118)||(52363960-52364018)
chr3 (208-253)||(46853532-46853577)
chr3 (174-239)||(47356257-47356322)
chr3 (208-252)||(35253466-35253510)
[»] scaffold0168 (1 HSPs)
scaffold0168 (60-260)||(31721-31923)
[»] scaffold0314 (1 HSPs)
scaffold0314 (61-120)||(17322-17381)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 6e-66; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 27968085 - 27967926
Alignment:
Q  1 ttttatataaacacacctatgttattaacttttatgctggataagcgtctaattaagtatatgtttgattccacttctaaaggggccaaaattgattatg 100  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||     
T  27968085 ttttatataaacacacctatgttattaacttttatgctagatacgcgtctaattaagtatatgtttgattccacttctaaagaggtcaaaattgattata 27967986  T
Q  101 taggtgtagaattgattatg-catgtgtggttggagtagaattgattttgcctcaagaat 159  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  27967985 taggtgtagaattgattatgacatgtatggttggagtagaattgattttgcctcaagaat 27967926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 166 - 337
Target Start/End: Complemental strand, 27967508 - 27967335
Alignment:
Q  166 ttgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcactttt-acatatatgtattcaa 264  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||    
T  27967508 ttgattttacttgaaattaggatttataattttttattcaataattgacttttacgcacaaatttatagttcaactcattttttacatatatgtattcaa 27967409  T
Q  265 gaacaaattattttaccgtcaattaacttttagtcataatcaattttataga-ctcattcaaaatcaattctaa 337  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  27967408 gaacaaattatttgaccctcaattaacttttagtcataatcaattttatagatttcattcaaaatcaattctaa 27967335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 351 - 476
Target Start/End: Complemental strand, 27967348 - 27967223
Alignment:
Q  351 aaaatcaattctaatggacatcaattaacttgcattgtttatacggcttaaaacattgtctcaacagtgtgccatatttcattgccaatccttcgtcatt 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27967348 aaaatcaattctaatggacatcaattaacttgcattgtttatacggctgaaaacattgtctcaacagtgtgccatatttcattgccaatccttcgtcatt 27967249  T
Q  451 tatatttgtccattcttgatgatatt 476  Q
    ||||||||||||||||||||||||||    
T  27967248 tatatttgtccattcttgatgatatt 27967223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 64 - 252
Target Start/End: Original strand, 35064962 - 35065149
Alignment:
Q  64 tttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgattatg-catgtgtggttg-----gagtagaattgattttgcctcaaga 157  Q
    |||| ||||||||||  ||||| |||||||||||||| ||||||||||||||||||| ||| | ||||||     |||||||||||||||||||          
T  35064962 tttggttccacttctcgaggggtcaaaattgattatggaggtgtagaattgattatgacatttttggttgctttcgagtagaattgattttgcc------ 35065055  T
Q  158 atcaagaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
     |||| ||||||| |||||||||| ||| |||| |   |||| |||| | |||||| |||||||||||||||||||  || ||||||||||||||    
T  35065056 -tcaataattgattttacttgaagctagtatttgtgacttttgattctagaattgatttttacacacaaatttatatctccactcacttttacat 35065149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 173 - 278
Target Start/End: Complemental strand, 33347248 - 33347143
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaat 272  Q
    ||||||||| |||||||| || |||||||||| |||||| | |||| ||||||||| |||||||||| ||||||||||||   |||||||||  | ||||    
T  33347248 tacttgaaggtaggatttgtaattttttattcgataattaatttttgcacacaaatatatagttcaattcacttttacatgattgtattcaaacaaaaat 33347149  T
Q  273 tatttt 278  Q
    ||||||    
T  33347148 tatttt 33347143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 16551966 - 16552041
Alignment:
Q  175 cttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    ||||||| |||||||| ||||||||  ||| | |||||| |||  |||||||||||||||||||||||||||||||||    
T  16551966 cttgaagctaggatttgtagtttttagttctagaattgatttt--cacacaaatttatagttcaactcacttttacat 16552041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 32818459 - 32818369
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    |||||||||  || |||||| ||| |||| ||| |||| |||| | |||||| |||| |||||||||||||||||||||| ||||||||||    
T  32818459 agaattgattctatttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaatttatagttcaactaacttttacat 32818369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 49139025 - 49138968
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    |||||||| |||||||||||||| |||||||||||||| |  ||||||||||||||||    
T  49139025 tatgtttggttccacttctaaagtggccaaaattgattctagaggtgtagaattgatt 49138968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 53713653 - 53713560
Alignment:
Q  159 tcaagaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    ||||||||| || |||||||||| || ||||| ||| |||| |||| |||||||||||  ||| | | || |||||||||||||||||||||||    
T  53713653 tcaagaattaattttacttgaagctacgatttgtagcttttgattctataattgacttccacataaatatatatagttcaactcacttttacat 53713560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 4905938 - 4905855
Alignment:
Q  196 tttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaattatttta 279  Q
    |||| |||||| |||||| ||||| |||  |||||| |||||||  |||||||||||| ||||||||||  |||||||||||||    
T  4905938 ttttgattcaagaattgatttttaaacaagaatttacagttcaatccacttttacataaatgtattcaaacacaaattatttta 4905855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 52965932 - 52965854
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttaca 251  Q
    ||||||||||||  |||||||| |||| |||| | |||||| | | ||||| ||||||||| |||||||||||||||||    
T  52965932 tacttgaagttactatttatagcttttgattctaaaattgattctaacacataaatttataattcaactcacttttaca 52965854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 50061715 - 50061630
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcactttta 249  Q
    |||||||  |||||||||||||||||| |||||||| |||| | | |||| ||| ||||| || ||||| ||||||||| ||||||    
T  50061715 aattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacacataattttatggttcaactcgctttta 50061630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 21691255 - 21691211
Alignment:
Q  208 aattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    |||||| ||| |||||||||||||||||||||| |||||||||||    
T  21691255 aattgattttcacacacaaatttatagttcaacacacttttacat 21691211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 21691409 - 21691353
Alignment:
Q  61 atgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    ||||||| ||||||||||| |||| ||| |||||||| || ||||||||||||||||    
T  21691409 atgtttggttccacttctagagggaccagaattgattctggaggtgtagaattgatt 21691353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 41370088 - 41370000
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaa 264  Q
    |||||||||||||||||||||||||||||||| | | ||||  |||  ||  ||||||||||||||||||| ||||| ||| | ||||||||    
T  41370088 tacttgaagttaggatttatagttttttattctagacttga--ttttgacgtaaatttatagttcaactca-ttttaaataaaagtattcaa 41370000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 50061828 - 50061768
Alignment:
Q  57 gtatatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    ||||||||||| ||||||||||| |||  |||||||||||| || |||| |||||||||||    
T  50061828 gtatatgtttggttccacttctagaggaaccaaaattgattctggaggtctagaattgatt 50061768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 260
Target Start/End: Complemental strand, 53913664 - 53913568
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtat 260  Q
    ||||||| |||||| ||| || |||||||  ||| | |||| |||||||| ||| ||||| |||||||||||| |||||||| | ||||| ||||||    
T  53913664 aattgattttacttaaagatatgatttatcatttgtgattctataattgattttcacacataaatttatagttaaactcactataacataaatgtat 53913568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 9064229 - 9064324
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgta 259  Q
    |||||||  ||||||||  ||| |||| |||||||| |||| | |||||| ||| |||| ||| ||||  |||||||||||||||||||| |||||    
T  9064229 aattgattctacttgaaactagaatttgtagtttttgattctagaattgattttcacactcaagtttacggttcaactcacttttacataaatgta 9064324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 279
Target Start/End: Complemental strand, 31360991 - 31360928
Alignment:
Q  216 tttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaattatttta 279  Q
    |||||||| |||| ||||||||||| |||||||||||  |||| |||||  |||||||||||||    
T  31360991 tttacacataaatgtatagttcaacccacttttacatgaatgtgttcaaatacaaattatttta 31360928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 32100336 - 32100379
Alignment:
Q  210 ttgacttttacacacaaatttatagttcaactcacttttacata 253  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||    
T  32100336 ttgatttttacactcaaatttattgttcaactcacttttacata 32100379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 39386668 - 39386719
Alignment:
Q  201 attcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    |||| |||||||| ||| ||||||| ||||| ||||||||||||||||||||    
T  39386668 attctataattgattttcacacacatatttaaagttcaactcacttttacat 39386719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 30357508 - 30357582
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagtt 236  Q
    |||||||||  ||||||||| |  ||||| ||| |||| |||  |||||||| ||||||||||||||||||||||    
T  30357508 agaattgattctacttgaagctgtgatttgtagcttttgattatataattgatttttacacacaaatttatagtt 30357582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 47298045 - 47297985
Alignment:
Q  182 ttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactca 243  Q
    ||||||||| |||||||| |||| |||||||| ||||||| | |||| ||||||||||||||    
T  47298045 ttaggatttgtagttttt-attctataattgatttttacatataaatgtatagttcaactca 47297985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 54705581 - 54705524
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    |||||||| ||||||||||| ||||||||||||||  |||| |||| || ||||||||    
T  54705581 tatgtttggttccacttctagaggggccaaaattggctatgaaggtatataattgatt 54705524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 4243429 - 4243473
Alignment:
Q  208 aattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    |||||| |||||||| ||||||||| |||| ||||||||||||||    
T  4243429 aattgatttttacactcaaatttattgttctactcacttttacat 4243473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 8604709 - 8604621
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    |||||||  ||||||||| || ||||| ||| |||  |||| | |||||| ||| |||||||||||||||||| ||  |||||||||||    
T  8604709 aattgattctacttgaagctaagatttgtagctttcgattctagaattgattttcacacacaaatttatagttgaatgcacttttacat 8604621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 33456269 - 33456329
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgattatg 120  Q
    |||||||| ||||||||||| |||| | | |||||||| || | |||||||||||||||||    
T  33456269 tatgtttggttccacttctagagggactataattgattttgaatgtgtagaattgattatg 33456329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 46345012 - 46344968
Alignment:
Q  69 ttccacttctaaaggggccaaaattgattatgtaggtgtagaatt 113  Q
    ||||||||||| |||| ||||||||||||||| ||||||| ||||    
T  46345012 ttccacttctagagggcccaaaattgattatggaggtgtataatt 46344968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 172 - 316
Target Start/End: Original strand, 7524119 - 7524263
Alignment:
Q  172 ttacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaa 271  Q
    ||||||||||||||||||| ||| |||| |||  | |||||| ||||||||||||||||||||||||||||||||||||||| |||| | |||  |||||    
T  7524119 ttacttgaagttaggatttgtagcttttgattatagaattgatttttacacacaaatttatagttcaactcacttttacataaatgtgtccaaacacaaa 7524218  T
Q  272 ttattttaccgtcaattaacttttagtcataatcaattttataga 316  Q
    | | |||||| | |  | ||||||||| | |||||||||||||||    
T  7524219 tcactttaccttgagctcacttttagttagaatcaattttataga 7524263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 175 - 264
Target Start/End: Complemental strand, 34721916 - 34721827
Alignment:
Q  175 cttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaa 264  Q
    |||||||||||||||| | ||||||||||| |||||||| ||| ||||||||||||||||||| ||| ||||||||||  ||||||||||    
T  34721916 cttgaagttaggatttgttgttttttattctataattgattttcacacacaaatttatagttcgacttacttttacatcaatgtattcaa 34721827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 1514350 - 1514450
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaat 272  Q
    ||||||||| |||||||| ||| ||||||||  |||||||| |||||||||||||||||| |||||||||| ||||||||  |||||| |||  ||||||    
T  1514350 tacttgaagctaggatttgtagctttttattatataattgatttttacacacaaatttattgttcaactcatttttacatgaatgtatccaaacacaaat 1514449  T
Q  273 t 273  Q
    |    
T  1514450 t 1514450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 7790731 - 7790644
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcactttta 249  Q
    |||||||||  |||||||||||| ||||| ||| |||  |||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  7790731 agaattgattctacttgaagttatgatttgtagatttagattctataattgatttttacacacaaatttattgttcaactcactttta 7790644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 11049257 - 11049334
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttac 250  Q
    ||||||||| |||||||| ||| |||| |||| | |||||| ||||||||||||||||||||||||| ||||||||||    
T  11049257 tacttgaagctaggatttgtagcttttgattctaaaattgatttttacacacaaatttatagttcaagtcacttttac 11049334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 44801592 - 44801671
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    |||||||||||||||||| ||||||||||||| | |||| | |||||| | ||||||||||  |||||||||||||||||    
T  44801592 tacttgaagttaggatttgtagttttttattctaaaattaatttttacgcgcaaatttatatctcaactcacttttacat 44801671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 3416078 - 3416163
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcactttta 249  Q
    |||||||  ||||| |||||| ||||| ||||||||||||  | |||||| |||||||||||||||||||||| |||||| |||||    
T  3416078 aattgattatacttaaagttaagatttgtagttttttattttagaattgatttttacacacaaatttatagtttaactcaatttta 3416163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 309
Target Start/End: Complemental strand, 28083975 - 28083831
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtattca 263  Q
    |||||||  ||||||||| ||| |||| ||| |||| |||| |||||| | ||||||||||||||||  |||||| |||||||||||||  || ||| ||    
T  28083975 aattgattctacttgaagctagaatttgtagcttttgattctataattaatttttacacacaaatttcaagttcagctcacttttacatgaatatatcca 28083876  T
Q  264 agaacaaattattttaccgtcaattaacttttagtcataatcaatt 309  Q
    |  ||||| || |||||  |||||| ||| ||||||||||||||||    
T  28083875 aacacaaa-taatttacattcaattcactcttagtcataatcaatt 28083831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 30850477 - 30850398
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    ||||||||  |||||||| |||||||| |||  | |||||| ||| ||| ||||||||||||||||||||||||||||||    
T  30850477 tacttgaaactaggatttgtagtttttaattttagaattgattttaacatacaaatttatagttcaactcacttttacat 30850398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 30557514 - 30557585
Alignment:
Q  176 ttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcactttta 249  Q
    |||||| |||||||| |||||||| |||| | |||||| |||  ||||||||||||||||||||||||||||||    
T  30557514 ttgaagctaggatttgtagtttttgattctagaattgatttt--cacacaaatttatagttcaactcactttta 30557585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 38797716 - 38797631
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcactttta 249  Q
    |||||||  |||||||||||| ||||| ||  || | | |||| |||||| ||| |||||||||||||||||||||||||||||||    
T  38797716 aattgattatacttgaagttatgatttgtaacttctaaatcaagaattgattttcacacacaaatttatagttcaactcactttta 38797631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 252
Target Start/End: Original strand, 6021779 - 6021890
Alignment:
Q  134 agtagaattgattttgcctcaagaatcaagaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttata 233  Q
    |||||||||||||||||||| ||||||       |||  ||||||||| |||||| | ||| |||| |||| ||||| || |||||||| ||| |||||     
T  6021779 agtagaattgattttgcctctagaatc-------gattctacttgaagctaggatatgtagcttttgattctataatagatttttacactcaagtttatg 6021871  T
Q  234 gttcaactcacttttacat 252  Q
    |||||||||||||||||||    
T  6021872 gttcaactcacttttacat 6021890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 312
Target Start/End: Complemental strand, 11817347 - 11817256
Alignment:
Q  221 acacaaatttatagttcaactcacttttacatatatgtattcaagaacaaattattttaccgtcaattaacttttagtcataatcaatttta 312  Q
    ||||||||||||||||||||| ||||||||||  ||||||||||  | |||| |||||| | |||| |  |||||||| | |||||||||||    
T  11817347 acacaaatttatagttcaactaacttttacattaatgtattcaaataaaaatcattttatcttcaactcgcttttagttagaatcaatttta 11817256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 50571280 - 50571357
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaa 239  Q
    |||||||||  |||||||||||||||||| ||||||||||||| | || |||  || | ||||||| |||||||||||    
T  50571280 agaattgattctacttgaagttaggatttgtagttttttattctagaactgatgttcagacacaaagttatagttcaa 50571357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 3016160 - 3016248
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    |||||||  |||||||| |||| |||| ||| |||| |||| | ||||||  |||||||| |||||||  |||||||||||||||||||    
T  3016160 aattgattctacttgaacttagaatttgtagcttttgattctagaattgatgtttacacataaatttacggttcaactcacttttacat 3016248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 36780310 - 36780250
Alignment:
Q  57 gtatatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    ||||||||||||||  |||| || |||| ||| ||||||||||| ||||||||||||||||    
T  36780310 gtatatgtttgattttacttttagagggaccataattgattatggaggtgtagaattgatt 36780250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 10325016 - 10324937
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    ||||||||| ||| | || ||| |||| |||| |||||||| |||||||| ||||||||| |||  ||||||||||||||    
T  10325016 tacttgaagatagaaattgtagcttttgattctataattgatttttacactcaaatttattgttatactcacttttacat 10324937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 32370109 - 32370030
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    ||||||||||||| |||| || |||||||||| | ||||   ||||||||||||||||||| || ||||  |||||||||    
T  32370109 tacttgaagttagaatttgtaattttttattctagaattattttttacacacaaatttataattgaacttgcttttacat 32370030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 40043512 - 40043426
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcactttta 249  Q
    ||||||||| |||| ||||||||| |||| || |||||  || ||||||||| ||| |||||||||||| |||||| |||||| ||||    
T  40043512 agaattgattttacatgaagttagaatttgtaatttttgttt-aataattgattttcacacacaaatttttagttctactcacgttta 40043426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 34387780 - 34387710
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatag 234  Q
    ||||||| |||||||||||| ||| ||  || |||| |||| |||||||| ||| ||||||||||||||||    
T  34387780 aattgattttacttgaagttgggaattgcagcttttgattctataattgattttcacacacaaatttatag 34387710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 301
Target Start/End: Original strand, 34915119 - 34915201
Alignment:
Q  219 acacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaattattttaccgtcaattaacttttagtcat 301  Q
    |||||| | |||||| ||||||||||||||||||  ||||||||||  | |||| ||||||||  ||| | ||||||||||||    
T  34915119 acacaccattttataattcaactcacttttacatgaatgtattcaaacataaatcattttacctgcaactcacttttagtcat 34915201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 14644592 - 14644649
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    |||||||| ||| |||| |||||||| |||||||||||||| || |||| ||||||||    
T  14644592 tatgtttggttcaacttttaaaggggacaaaattgattatggagatgtaaaattgatt 14644649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 15084783 - 15084726
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    |||||||| ||| ||||||| ||||| ||| ||||||| || ||||||||||||||||    
T  15084783 tatgtttggttctacttctagaggggtcaatattgattctgaaggtgtagaattgatt 15084726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 28084078 - 28084021
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    |||||||||||||||||||| ||| ||||||||||| | ||   ||||||||||||||    
T  28084078 tatgtttgattccacttctagaggagccaaaattgactctggtagtgtagaattgatt 28084021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 312
Target Start/End: Original strand, 35961417 - 35961514
Alignment:
Q  215 ttttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaattattttaccgtcaattaacttttagtcataatcaatttta 312  Q
    ||||| ||||||||||| | ||||||||||||||||||  ||||||  ||  | |||| |||||||| |||| | |||||||| | ||||| ||||||    
T  35961417 ttttatacacaaatttaaaattcaactcacttttacatgaatgtatagaaacataaatcattttaccttcaactcacttttagccgtaatctatttta 35961514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 30996037 - 30996117
Alignment:
Q  161 aagaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaact 241  Q
    ||||||||||  |||||||||||| ||||  ||||||||||||  | ||||   |||||| |||| |||||||||||||||    
T  30996037 aagaattgattctacttgaagttatgattagtagttttttattatagaattagtttttacccacacatttatagttcaact 30996117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 47321950 - 47321906
Alignment:
Q  208 aattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    |||||| ||| | ||||||||||||||||||| ||||||||||||    
T  47321950 aattgattttcatacacaaatttatagttcaattcacttttacat 47321906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 173 - 312
Target Start/End: Original strand, 40491585 - 40491724
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaat 272  Q
    |||||||||||| | ||| ||| |||| |||| | |||||||||||||||||||||||| |||| |||||||||||||||  |||||| ||| || ||||    
T  40491585 tacttgaagttaagttttgtagcttttgattctagaattgacttttacacacaaatttaaagtttaactcacttttacatgaatgtatccaaaaataaat 40491684  T
Q  273 tattttaccgtcaattaacttttagtcataatcaatttta 312  Q
     | |||||| |||| | ||||||||||| |||||||||||    
T  40491685 cactttaccttcaactcacttttagtcaaaatcaatttta 40491724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 209 - 309
Target Start/End: Original strand, 45557408 - 45557508
Alignment:
Q  209 attgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaattattttaccgtcaattaacttttagtcataatcaat 308  Q
    ||||| |||||||||||||||| ||| |||||||||||||||||  |||||| |||  |||||| | |||||| |||| | ||||||||||| |||||||    
T  45557408 attgatttttacacacaaatttgtagctcaactcacttttacatgaatgtatccaaacacaaatcactttaccttcaactcacttttagtcagaatcaat 45557507  T
Q  309 t 309  Q
    |    
T  45557508 t 45557508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 41386904 - 41386818
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcactttt 248  Q
    |||||||||  ||||||||| |||||||| ||| |||| |||| | ||||||  |||||||||||||||||| ||||||||||||||    
T  41386904 agaattgattctacttgaagctaggatttgtagcttttaattctagaattgatatttacacacaaatttataattcaactcactttt 41386818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 162 - 310
Target Start/End: Complemental strand, 38123755 - 38123607
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtatt 261  Q
    |||||||||  ||||||||| ||| | || ||| || | |||| | |||||| |||||||| ||||||||| | |||||||||||||||||  |||| |     
T  38123755 agaattgattctacttgaagctagaaattgtagcttctaattctagaattgatttttacactcaaatttattggtcaactcacttttacatgaatgtgtc 38123656  T
Q  262 caagaacaaattattttaccgtcaattaacttttagtcataatcaattt 310  Q
    | |  |||||||| |||||| |||| | | |||||||||||||||||||    
T  38123655 cgaacacaaattactttaccttcaactcaattttagtcataatcaattt 38123607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 159 - 309
Target Start/End: Original strand, 27571855 - 27572005
Alignment:
Q  159 tcaagaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgt 258  Q
    ||||||||||||  ||||||||||||| | ||  || |||| |||| | |||||| ||| |||| ||| |||||  |||||||||| |||||||| ||||    
T  27571855 tcaagaattgattctacttgaagttagaaattggagcttttgattctagaattgattttaacactcaagtttattattcaactcacatttacataaatgt 27571954  T
Q  259 attcaagaacaaattattttaccgtcaattaacttttagtcataatcaatt 309  Q
    || |||  | |||| |||||||| | || | |||||||| |||||||||||    
T  27571955 atccaaccataaatcattttacctttaactcacttttagccataatcaatt 27572005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 300
Target Start/End: Original strand, 25156226 - 25156334
Alignment:
Q  192 tagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaattattttaccgtcaattaac 291  Q
    ||||||||||||| | |||||| ||||||||| ||||| |||  |||||||||||||| ||  ||||||||||  |||||| |||||| | |||| | |     
T  25156226 tagttttttattctagaattgatttttacacataaattaataaatcaactcacttttatatgaatgtattcaaacacaaatcattttatcttcaactcat 25156325  T
Q  292 ttttagtca 300  Q
    |||||||||    
T  25156326 ttttagtca 25156334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 261
Target Start/End: Original strand, 32295237 - 32295279
Alignment:
Q  219 acacacaaatttatagttcaactcacttttacatatatgtatt 261  Q
    ||||||||||||||| ||||||||||||||||||| |||||||    
T  32295237 acacacaaatttataattcaactcacttttacataaatgtatt 32295279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 44638523 - 44638435
Alignment:
Q  175 cttgaagttaggatttatagtttttt--attcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtatt 261  Q
    ||||||||||   |||||||||||||  ||| || |||||| ||||||||||||||||||| ||||||||   |||||||| |||||||    
T  44638523 cttgaagttatactttatagtttttttaattaaaaaattgatttttacacacaaatttataattcaactcgtatttacataaatgtatt 44638435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 45004873 - 45004937
Alignment:
Q  53 ttaagtatatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    |||||| ||| |||| || |||||||||| ||||||||||||||| |  ||||||||||||||||    
T  45004873 ttaagtgtatatttggtttcacttctaaaagggccaaaattgattctagaggtgtagaattgatt 45004937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 40561850 - 40561757
Alignment:
Q  159 tcaagaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    ||||||||||||  ||||||||||||| | || |||||| | | || | |||| | || ||||| ||||| ||| |||||||||||||||||||    
T  40561850 tcaagaattgattctacttgaagttagaaattgtagtttgtaagtctagaattaatttatacactcaaatatattgttcaactcacttttacat 40561757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 45997707 - 45997764
Alignment:
Q  186 gatttatagttttttattcaataattgacttttaca-cacaaatttatagttcaactc 242  Q
    ||||||||| |||| |||| |||||| | ||||||| |||||||||||||||||||||    
T  45997707 gatttatagcttttgattctataatttatttttacaacacaaatttatagttcaactc 45997764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 278
Target Start/End: Complemental strand, 4074353 - 4074261
Alignment:
Q  186 gatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaattatttt 278  Q
    |||||||||||||| |||||| |||||| ||||||  | ||| ||||||||||| | ||||||| |||  | |||||||  | ||||||||||    
T  4074353 gatttatagtttttgattcaagaattgatttttacctaaaaaattatagttcaatttacttttaaataagtttattcaaacataaattatttt 4074261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 9480653 - 9480586
Alignment:
Q  206 ataattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaatta 274  Q
    |||||||| |||||| |||||||||||| || |||||||||||| ||  ||||||||||  ||||||||    
T  9480653 ataattga-ttttacgcacaaatttataatttaactcacttttaaatgaatgtattcaatcacaaatta 9480586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 309
Target Start/End: Original strand, 17111896 - 17111988
Alignment:
Q  217 ttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaattattttaccgtcaattaacttttagtcataatcaatt 309  Q
    ||||||||||||||||| ||| ||||| ||||||||  ||| || |||  |||||| | ||||||  ||||| | ||||||||| ||||||||    
T  17111896 ttacacacaaatttataattctactcatttttacatgaatgcatccaaacacaaatcactttacctacaattcaattttagtcaaaatcaatt 17111988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 42858104 - 42858194
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    ||||||||| |||||||||||||||||||  || |||| |||| |||||||| ||| ||||||||||||||||||||||||||||||||||    
T  42858104 agaattgattttacttgaagttaggatttggagcttttaattctataattgattttcacacacaaatttatagttcaactcacttttacat 42858194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 6951392 - 6951304
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    |||||||  |||||||||||||||||| ||| |||| |||| |||||||| || |||||| ||||||||| ||||| ||||||||||||    
T  6951392 aattgattctacttgaagttaggatttgtagcttttgattctataattgatttgtacacataaatttataattcaattcacttttacat 6951304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 28031248 - 28031161
Alignment:
Q  176 ttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaa 264  Q
    |||||||||  ||||||| ||||| |||  |||||||||||||| |||||||||||||| |||||| ||||||||||  ||||||||||    
T  28031248 ttgaagttaaaatttatattttttgattatataattgactttta-acacaaatttatagatcaacttacttttacatgaatgtattcaa 28031161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 247
Target Start/End: Original strand, 14299328 - 14299411
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttt 247  Q
    |||||||  |||||||||||||||||| ||||||||||||| | |||||  ||| ||||| ||||||||||||| | |||||||    
T  14299328 aattgattctacttgaagttaggatttgtagttttttattctagaattggttttcacacataaatttatagttcgattcacttt 14299411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 207 - 252
Target Start/End: Original strand, 10898762 - 10898807
Alignment:
Q  207 taattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||    
T  10898762 taattgatttttacacacaaatttattgttcaactcacttttacat 10898807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 314
Target Start/End: Original strand, 38587126 - 38587234
Alignment:
Q  206 ataattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaattattttaccgtcaattaacttttagtcataatc 305  Q
    |||||||| ||||||||||||||||||  ||||  ||||||||||| | |  | |||||  ||||||||||||||| |||| | ||||||||||  ||||    
T  38587126 ataattgatttttacacacaaatttattattcagatcacttttacacaaaaatgttcaaatacaaattattttaccttcaacttacttttagtcggaatc 38587225  T
Q  306 aattttata 314  Q
    | |||||||    
T  38587226 acttttata 38587234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 38845441 - 38845525
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcactttt 248  Q
    |||||||  ||||||||| || ||||| |||||||| |||| | |||||| ||| |||||||||| ||||||| |||||||||||    
T  38845441 aattgattctacttgaagctaagatttgtagtttttgattctagaattgattttcacacacaaatatatagttaaactcactttt 38845525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 18851272 - 18851217
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattga 115  Q
    ||||||||||||| |||||| |||| ||||||||||||||| || |||||||||||    
T  18851272 tatgtttgattccgcttctagagggaccaaaattgattatggagttgtagaattga 18851217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 9818732 - 9818818
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgactttt-acacacaaatttatagttcaactcactttta 249  Q
    |||||||  ||||||||| || ||||| ||| |||| |||| | |||||| |||| | |||||||||||||||||||||||||||||    
T  9818732 aattgattctacttgaagctatgatttgtagcttttgattctagaattgattttttaaacacaaatttatagttcaactcactttta 9818818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 22226314 - 22226224
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtattca 263  Q
    ||||||||| ||| |||| ||| |||| |||  | |||| ||||||||||||||||||| ||||| ||| ||||||||||  |||||||||    
T  22226314 tacttgaagatagtatttgtagcttttgattttagaattaacttttacacacaaatttagagttcgactaacttttacattaatgtattca 22226224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 281
Target Start/End: Original strand, 31906257 - 31906374
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtattca 263  Q
    ||||||| |||||||||| || ||||| ||  |||| |||  ||||||||  ||| || | ||||||||||||||||||||||||||||  ||  || |     
T  31906257 aattgattttacttgaagctatgatttgtaacttttgattatataattgatattttcatataaatttatagttcaactcacttttacatgaattcatccg 31906356  T
Q  264 agaacaaattattttacc 281  Q
    | ||||||||||||||||    
T  31906357 aaaacaaattattttacc 31906374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 208 - 313
Target Start/End: Original strand, 34443017 - 34443122
Alignment:
Q  208 aattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaattattttaccgtcaattaacttttagtcataatcaa 307  Q
    |||||| ||| ||| ||||||||||  ||||| ||||||||| ||| ||||||||||  | ||||||||||||  ||||   | ||||||||||||||||    
T  34443017 aattgattttaacaaacaaatttatttttcaattcacttttatataaatgtattcaaacataaattattttactttcaacctaattttagtcataatcaa 34443116  T
Q  308 ttttat 313  Q
     |||||    
T  34443117 ctttat 34443122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 38845701 - 38845644
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    |||||||| ||||||||||| || | |||||||||||| || ||||||||||||||||    
T  38845701 tatgtttggttccacttctagagagaccaaaattgattctggaggtgtagaattgatt 38845644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 18851169 - 18851081
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    |||||||  ||||||||| || ||||| ||| |||| |||  | |||||| ||| ||||||| |||||||||| |||||||||||||||    
T  18851169 aattgattctacttgaagctatgatttgtagcttttgattatagaattgattttcacacacatatttatagttaaactcacttttacat 18851081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 253
Target Start/End: Complemental strand, 8506762 - 8506704
Alignment:
Q  195 ttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacata 253  Q
    |||||||||| | |||||| |||||||| || |||||| |||||| |||||||||||||    
T  8506762 ttttttattctaaaattgagttttacactcacatttattgttcaaatcacttttacata 8506704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 28110481 - 28110431
Alignment:
Q  208 aattgacttttacacacaaatttatagttcaactcacttttacatatatgt 258  Q
    |||||| ||| |||||||||||||||||| |||||||||||| ||| ||||    
T  28110481 aattgattttcacacacaaatttatagttgaactcacttttatataaatgt 28110431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 5468790 - 5468859
Alignment:
Q  183 taggatttatagttttttattcaataatt-gacttttacacacaaatttatagttcaactcacttttaca 251  Q
    ||||||||||| ||||| |||  |||||| || ||| | ||||||||||||||||||||||| |||||||    
T  5468790 taggatttataatttttaattttataatttgattttcatacacaaatttatagttcaactcatttttaca 5468859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 43268422 - 43268491
Alignment:
Q  88 aaaattgattatgtaggtgtagaattgattatgcatgtgtggttggagtagaattgattttgcctcaagaat 159  Q
    |||||||||| || ||||||| |||||||| || |||| |||| ||  |||||||||||||||||| |||||    
T  43268422 aaaattgattttggaggtgtaaaattgattttgtatgtttggtcgg--tagaattgattttgcctccagaat 43268491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 32736471 - 32736577
Alignment:
Q  175 cttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaatta 274  Q
    |||||| ||| ||||| ||||||||||||  | |||| | ||||||||||||||||||||||||| ||||||||||||  ||||||||||  ||||||||    
T  32736471 cttgaaattaagatttgtagttttttattttaaaattaatttttacacacaaatttatagttcaattcacttttacatgaatgtattcaaatacaaatta 32736570  T
Q  275 ttttacc 281  Q
    |||||||    
T  32736571 ttttacc 32736577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 176 - 312
Target Start/End: Complemental strand, 26100221 - 26100085
Alignment:
Q  176 ttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaattat 275  Q
    |||||| |||||||| ||| |||| |||| |||||||| |||||||||||||||||| |||||||||||||||||||| ||| || |||  ||||||       
T  26100221 ttgaagctaggatttgtagcttttgattctataattgatttttacacacaaatttatggttcaactcacttttacataaatgcatccaaacacaaatagc 26100122  T
Q  276 tttaccgtcaattaacttttagtcataatcaatttta 312  Q
    |||||| |||| |   ||||||||| |||||||||||    
T  26100121 tttaccttcaactcgtttttagtcagaatcaatttta 26100085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 309
Target Start/End: Complemental strand, 16972139 - 16972006
Alignment:
Q  176 ttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaattat 275  Q
    |||||| ||| |||| |||||||| |||  | |||||| ||||| |||||||||||| |||||| ||||||||||||  ||||||||||  |||||| ||    
T  16972139 ttgaagctagaatttgtagtttttaattttagaattgatttttaaacacaaatttattgttcaaatcacttttacatgaatgtattcaaacacaaatcat 16972040  T
Q  276 tttaccgtcaattaacttttagtcataatcaatt 309  Q
    |||||| |||| | ||||||||||  ||||||||    
T  16972039 tttaccttcaactcacttttagtctgaatcaatt 16972006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 173 - 312
Target Start/End: Original strand, 32927899 - 32928038
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaat 272  Q
    ||||||||| |||||||| ||| |||| |||  | |||| | ||||||||||||||||||||||||||||||||||||||  |||||| |||  ||||||    
T  32927899 tacttgaagctaggatttgtagcttttgattatagaattcatttttacacacaaatttatagttcaactcacttttacatgaatgtatccaaacacaaat 32927998  T
Q  273 tattttaccgtcaattaacttttagtcataatcaatttta 312  Q
     | ||| || |||| | | ||||||| | |||||||||||    
T  32927999 cactttgccttcaactcaattttagtaagaatcaatttta 32928038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 312
Target Start/End: Complemental strand, 32681348 - 32681243
Alignment:
Q  207 taattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaattattttaccgtcaattaacttttagtcataatca 306  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||||||  || |||||||  ||| || |||||| | |||||| | ||||||| | |||||    
T  32681348 taattgatttttaaacacaaatttataattcaactcacttttacatcaatatattcaactacagatcattttatcttcaattcatttttagtgagaatca 32681249  T
Q  307 atttta 312  Q
    ||||||    
T  32681248 atttta 32681243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 38868769 - 38868829
Alignment:
Q  192 tagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    ||||||||||||| |||||||| ||| || |||||||||||||||| ||||||||||||||    
T  38868769 tagttttttattctataattgattttcacgcacaaatttatagttctactcacttttacat 38868829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 15677905 - 15677814
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgactttt-acacacaaatttatagttcaactcacttttacat 252  Q
    |||||||||  ||||||||| |||||||||||| |||| |||  | |||||| |||| ||||||||||||||||||||||||| | ||||||    
T  15677905 agaattgattctacttgaagctaggatttatagcttttgattatagaattgattttttacacacaaatttatagttcaactcattgttacat 15677814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 38868496 - 38868583
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttaca 251  Q
    |||||||  ||||||||| || ||||| ||| ||||  ||| |||||||| ||| ||||||||||||||||||||||||| |||||||    
T  38868496 aattgattctacttgaagctaagatttgtagcttttggttctataattgattttcacacacaaatttatagttcaactcaattttaca 38868583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 37684401 - 37684499
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtat 260  Q
    |||||||||  |||||||||||||||||| | | |||| |||| | |||||| ||| |  || ||||||||| ||||||||||||||||||| ||||||    
T  37684401 agaattgattctacttgaagttaggatttgtggcttttgattctaaaattgattttaatgcaaaaatttataattcaactcacttttacataaatgtat 37684499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 13384718 - 13384653
Alignment:
Q  187 atttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    |||| ||| |||| |||| | |||||| ||| ||||||||||||||||||||||||||||||||||    
T  13384718 atttgtagcttttgattctagaattgattttcacacacaaatttatagttcaactcacttttacat 13384653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 18123289 - 18123358
Alignment:
Q  229 ttatagttcaactcacttttacatatatgtattcaagaacaaattattttaccgtcaattaacttttagt 298  Q
    ||||||||||||||||||||||||| || ||||| |  |||||| |||||||| |||||| |||||||||    
T  18123289 ttatagttcaactcacttttacataaatatattccaacacaaatcattttaccttcaattcacttttagt 18123358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 264
Target Start/End: Complemental strand, 40769423 - 40769354
Alignment:
Q  195 ttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaa 264  Q
    |||||||||| |||||||| ||| ||||||||||||||| ||||| ||| ||||||| | ||||||||||    
T  40769423 ttttttattctataattgattttcacacacaaatttataattcaattcaattttacacaaatgtattcaa 40769354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 44141137 - 44141052
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcactttta 249  Q
    |||||||  |||||||||||||||||| |||||||| |||| | | |||| ||| ||||| || ||||||||||||||| ||||||    
T  44141137 aattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacacataattttatagttcaactcgctttta 44141052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 4662981 - 4662906
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcactttt 248  Q
    ||||||||| |||||||| ||| ||||  ||| | |||||| |||||||||||||| ||||||||||||| |||||    
T  4662981 tacttgaagctaggatttgtagcttttgtttctagaattgatttttacacacaaatgtatagttcaactcgctttt 4662906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 32101080 - 32101167
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtat 260  Q
    ||||| ||||||| |||| |||||||| |||  | |||| | ||| | | ||||||||||||||||||||||||||||||| ||||||    
T  32101080 tacttaaagttagaatttgtagtttttaattttaaaattaattttcatatacaaatttatagttcaactcacttttacataaatgtat 32101167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 35495001 - 35495076
Alignment:
Q  177 tgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    ||||| |||||||| ||| |||| |||| | |||||  |||||||||||||| |||||||||||| ||||||||||    
T  35495001 tgaagctaggatttgtagcttttgattctagaattgttttttacacacaaatctatagttcaacttacttttacat 35495076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 312
Target Start/End: Complemental strand, 7601995 - 7601890
Alignment:
Q  206 ataattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaattattttaccgtcaattaacttttagtcataatc 305  Q
    |||||||| ||||| |||||||||| |||||||||||| |||| |||  || ||| |||  | |||| |||||||  |||||| ||||||||||| ||||    
T  7601995 ataattgatttttaaacacaaattt-tagttcaactcattttttcatgaatatatgcaactataaatcattttacattcaattcacttttagtcaaaatc 7601897  T
Q  306 aatttta 312  Q
    |||||||    
T  7601896 aatttta 7601890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 5859119 - 5859062
Alignment:
Q  195 ttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    ||||||||||   |||||| |||||||||||| ||||| |||||||||||||||||||    
T  5859119 ttttttattcctgaattgatttttacacacaattttatggttcaactcacttttacat 5859062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 10367896 - 10367953
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    |||||||| ||| ||||||| |||||||||||||||||||| || | |||||||||||    
T  10367896 tatgtttggttctacttctagaggggccaaaattgattatggagatatagaattgatt 10367953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 32767396 - 32767472
Alignment:
Q  175 cttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttaca 251  Q
    ||||||| || |||| |||| |||| |||| | || ||||||||||||  |||||||| ||||||||||||||||||    
T  32767396 cttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 32767472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 44141250 - 44141190
Alignment:
Q  57 gtatatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    ||||||||||| ||||||||||| |||  |||||||||||| || |||| |||||||||||    
T  44141250 gtatatgtttggttccacttctagaggaaccaaaattgattctggaggtctagaattgatt 44141190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 32994331 - 32994241
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    |||||||||  ||||||||| || ||||| ||| |||| | || | |||||| ||||| ||||||||||||||| ||| | ||||||||||    
T  32994331 agaattgattctacttgaagctatgatttctagcttttgagtctagaattgatttttatacacaaatttatagtgcaaatgacttttacat 32994241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 2924826 - 2924871
Alignment:
Q  215 ttttacacacaaatttatagttcaactcacttttacatatatgtat 260  Q
    |||||||| ||||| ||| | |||||||||||||||||||||||||    
T  2924826 ttttacactcaaatatattgatcaactcacttttacatatatgtat 2924871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 7533692 - 7533748
Alignment:
Q  56 agtatatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaat 112  Q
    |||||||||||| |||||||| |  ||||||||||||| ||| || |||||||||||    
T  7533692 agtatatgtttggttccacttttggaggggccaaaattaattctggaggtgtagaat 7533748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 211 - 297
Target Start/End: Original strand, 16518823 - 16518909
Alignment:
Q  211 tgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaattattttaccgtcaattaacttttag 297  Q
    |||||||||| |||||||||||||||||||||||||||||||  |||||| |||  |||||| |||||||| |||| | ||||||||    
T  16518823 tgacttttacgcacaaatttatagttcaactcacttttacatgaatgtatccaaacacaaatcattttaccctcaactcacttttag 16518909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 263
Target Start/End: Complemental strand, 26032124 - 26032023
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtatt 261  Q
    |||||||||  ||||||||||||| |||| ||   ||| ||||   ||||||||| |||||| ||||||||| ||||||||||||||||| |||||||||    
T  26032124 agaattgattatacttgaagttagaatttgtatcatttgattcttaaattgacttgtacacataaatttatacttcaactcacttttacacatatgtatt 26032025  T
Q  262 ca 263  Q
    ||    
T  26032024 ca 26032023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 10644610 - 10644697
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtat 260  Q
    |||||||||||| ||||| |||||||| |||  | |||| ||||| | ||| ||||||||||||||||||||||||| ||| ||||||    
T  10644610 tacttgaagttaagatttgtagtttttcattatagaattaactttcatacataaatttatagttcaactcacttttatataaatgtat 10644697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 3352074 - 3352163
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacata 253  Q
    ||||||| |||||||||||| ||| ||  || |||| |||| |||||||| ||| ||||||||||||||  ||||||| |||||||||||    
T  3352074 aattgattttacttgaagttgggaattgcagcttttgattctataattgattttcacacacaaatttatgtttcaacttacttttacata 3352163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 264
Target Start/End: Original strand, 42740975 - 42741074
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtattca 263  Q
    |||||||  ||||||||| || ||||| ||| |||| |||| | |||||| |||||||| ||||||||  || ||||||||||||||||| |||||||||    
T  42740975 aattgattctacttgaagctaagatttgtagcttttgattctagaattgatttttacactcaaatttactgtccaactcacttttacata-atgtattca 42741073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 30503098 - 30503161
Alignment:
Q  54 taagtatatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    ||||| |||| ||| ||||||||||||||||| ||||||||||| || | ||||||||||||||    
T  30503098 taagtgtatgcttggttccacttctaaaggggtcaaaattgattttggaagtgtagaattgatt 30503161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 33502279 - 33502322
Alignment:
Q  208 aattgacttttacacacaaatttatagttcaactcacttttaca 251  Q
    |||||| ||||||||||| |||||||||||||||||||||||||    
T  33502279 aattgatttttacacacatatttatagttcaactcacttttaca 33502322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 7297059 - 7297109
Alignment:
Q  214 cttttacacacaaatttatagttcaactcacttttacatatatgtattcaa 264  Q
    ||||||||  ||||||||| |||||||| ||||||||||||||||||||||    
T  7297059 cttttacattcaaatttattgttcaacttacttttacatatatgtattcaa 7297109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 11504133 - 11504052
Alignment:
Q  179 aagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtatt 261  Q
    |||||||||||| |||||||| |||  | |||||  ||| ||||||||| ||||||||||||||||||||||||  |||||||    
T  11504133 aagttaggatttgtagtttttgattatagaattgt-tttcacacacaaagttatagttcaactcacttttacatgaatgtatt 11504052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 31686047 - 31685981
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaa 239  Q
    ||||| ||||||| |  ||||||||||||||  | |||||||||||||| |||||||||||||||||    
T  31686047 tactttaagttagaaactatagttttttattttaaaattgacttttacatacaaatttatagttcaa 31685981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 312
Target Start/End: Complemental strand, 11759902 - 11759798
Alignment:
Q  208 aattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaattattttaccgtcaattaacttttagtcataatcaa 307  Q
    |||||| ||||||| ||||||||||||||||| ||||  |||||||  ||||| |||  |||||  | |||||| |||| | ||||||| ||| ||||||    
T  11759902 aattgatttttacatacaaatttatagttcaaatcacgcttacataagtgtatacaaacacaaaccaatttaccttcaactcacttttaatcaaaatcaa 11759803  T
Q  308 tttta 312  Q
    |||||    
T  11759802 tttta 11759798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 33019199 - 33019155
Alignment:
Q  208 aattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    |||||| ||| ||||| ||||||||||||||||||||||||||||    
T  33019199 aattgattttcacacataaatttatagttcaactcacttttacat 33019155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 2002773 - 2002718
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaat 228  Q
    ||||||||| |||||||| |||||||| |||| | |||||| ||||||||||||||    
T  2002773 tacttgaagctaggatttgtagtttttcattctaaaattgatttttacacacaaat 2002718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 13912798 - 13912873
Alignment:
Q  177 tgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    ||||| ||| |||| || |||||||||| | |||| | |||||||||||||||||  |||||||||| ||||||||    
T  13912798 tgaagctagaatttgtaattttttattctagaattaatttttacacacaaatttaccgttcaactcatttttacat 13912873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 42982551 - 42982630
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    ||||||||| ||| | || ||| |||| |||| | |||||| ||||||||||||||||||  | ||||||||||||||||    
T  42982551 tacttgaagctagaaattgtagcttttgattccagaattgatttttacacacaaatttattttacaactcacttttacat 42982630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 249
Target Start/End: Original strand, 45066434 - 45066525
Alignment:
Q  158 atcaagaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcactttta 249  Q
    ||||| ||||||| ||| |||||||||  |||| ||||||||||||  | |||| | ||| ||||||||||||||| ||||| ||| |||||    
T  45066434 atcaataattgattttagttgaagttaaaatttttagttttttattttaaaatttattttcacacacaaatttataattcaattcattttta 45066525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 4376079 - 4376018
Alignment:
Q  177 tgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaa 239  Q
    ||||||||||||||||||||||| | || | |||||| ||| ||| |||||||||||||||||    
T  4376079 tgaagttaggatttatagtttttgaatctacaattga-tttcacatacaaatttatagttcaa 4376018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 9605242 - 9605280
Alignment:
Q  222 cacaaatttatagttcaactcacttttacatatatgtat 260  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  9605242 cacaaatttattgttcaactcacttttacataaatgtat 9605280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 7632818 - 7632863
Alignment:
Q  215 ttttacacacaaatttatagttcaactcacttttacatatatgtat 260  Q
    |||||||| ||| ||||| |||||||||||||||||| ||||||||    
T  7632818 ttttacactcaagtttattgttcaactcacttttacaaatatgtat 7632863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 32596033 - 32596078
Alignment:
Q  208 aattgacttttacacacaaatttatagttcaactcacttttacata 253  Q
    |||||| ||||||| ||||||| ||| |||||||||||||||||||    
T  32596033 aattgatttttacatacaaattcataattcaactcacttttacata 32596078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 33047742 - 33047685
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    |||||||| || | |||||| |||| |||||||||||| || ||||||||||||||||    
T  33047742 tatgtttggtttcgcttctagagggaccaaaattgattttggaggtgtagaattgatt 33047685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 44439296 - 44439341
Alignment:
Q  208 aattgacttttacacacaaatttatagttcaactcacttttacata 253  Q
    |||||| ||| |||| ||||||||| ||||||||||||||||||||    
T  44439296 aattgattttaacactcaaatttattgttcaactcacttttacata 44439341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 39009008 - 39008968
Alignment:
Q  209 attgacttttacacacaaatttatagttcaactcactttta 249  Q
    ||||| ||||||||| ||||||||| |||||||||||||||    
T  39009008 attgaattttacacataaatttataattcaactcactttta 39008968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 60 - 294
Target Start/End: Complemental strand, 5724820 - 5724587
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgattatg-catgtgtggttgga-----gtagaattgattttgcctc 153  Q
    |||||||| ||||||||||| ||||||||||||| ||| |  | |||||||||||||| || ||||| ||| ||       |||||||||||||||||||    
T  5724820 tatgtttggttccacttctagaggggccaaaattaattctagaagtgtagaattgattctgacatgtttggatgctttcaggtagaattgattttgcctc 5724721  T
Q  154 aagaatcaagaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacata 253  Q
          ||| |||||||  ||||||||| |||||||| ||  ||||||||| |||||||| |||||||||||||| |||  || |||||||||||| ||     
T  5724720 ------caa-aattgattctacttgaagctaggatttgtaactttttattctataattgatttttacacacaaatatatcatttaactcacttttatatg 5724628  T
Q  254 tatgtattcaagaacaaattattttaccgtcaattaacttt 294  Q
     |  |||||||  |||||| | |||||| ||||||||||||    
T  5724627 aacatattcaaacacaaatcactttaccttcaattaacttt 5724587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 253
Target Start/End: Original strand, 26280598 - 26280692
Alignment:
Q  159 tcaagaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacata 253  Q
    ||||||||||||   |||||||| ||| |||| |||||||| |||| | |||||| ||||||  |||||||||||||| ||||||||||||||||    
T  26280598 tcaagaattgattccacttgaagctagaatttgtagtttttgattccaaaattgatttttacgtacaaatttatagttaaactcacttttacata 26280692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 260
Target Start/End: Original strand, 4910901 - 4911002
Alignment:
Q  159 tcaagaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgt 258  Q
    |||| |||||||  ||||||||| || ||||| ||| |||| |||| | |||||| ||| ||| ||||||||||||||| ||||||||||||||| ||||    
T  4910901 tcaaaaattgattctacttgaagctatgatttgtagcttttgattctagaattgattttcacatacaaatttatagttcgactcacttttacataaatgt 4911000  T
Q  259 at 260  Q
    ||    
T  4911001 at 4911002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 134 - 246
Target Start/End: Original strand, 25195818 - 25195930
Alignment:
Q  134 agtagaattgattttgcctcaagaatcaagaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttata 233  Q
    |||| ||||||||||||||  ||||   |||||||||  || || ||  |||||||||||| |||| |||| | |||||| || ||||||||||||||||    
T  25195818 agtaaaattgattttgccttcagaaatcagaattgattctaattaaaactaggatttatagcttttgattctagaattgaattgtacacacaaatttata 25195917  T
Q  234 gttcaactcactt 246  Q
    |||||||||||||    
T  25195918 gttcaactcactt 25195930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 25195432 - 25195357
Alignment:
Q  185 ggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtat 260  Q
    |||||| |||||||| |||| |||||||| ||| | ||||||||||| | ||||||||||||||||||| ||||||    
T  25195432 ggatttgtagtttttcattctataattgattttcatacacaaatttacaattcaactcacttttacataaatgtat 25195357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 957712 - 957622
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    ||||||||| ||||||| || || |||||||||||||| |||| ||||| || ||||||||||||| ||| | || |||||| ||||||||    
T  957712 agaattgattttacttgtagctaagatttatagtttttgattccataatcgatttttacacacaaacttaaaatttaactcatttttacat 957622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 3482042 - 3482144
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacatatatgtatt 261  Q
    |||||||||  |||||||||||| ||||| |||  ||| |||  | |||||| ||| |||||||| |||||||||||||| ||||||||||  |||||||    
T  3482042 agaattgattatacttgaagttaagatttgtagcctttgattttagaattgattttcacacacaagtttatagttcaacttacttttacatgaatgtatt 3482141  T
Q  262 caa 264  Q
    |||    
T  3482142 caa 3482144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 295
Target Start/End: Original strand, 8854962 - 8855048
Alignment:
Q  208 aattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaattattttaccgtcaattaactttt 295  Q
    |||||| ||||||| |||||||||| ||| |||| ||||||||||  |||||| |||  ||||||||||||||| |||| ||||||||    
T  8854962 aattgatttttacatacaaatttatggttgaacttacttttacattaatgtat-caaacacaaattattttaccttcaactaactttt 8855048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 4907902 - 4907968
Alignment:
Q  51 aattaagtatatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    ||||||||||||||||| | ||| |||||||| | | |||||||||| || ||||||||||||||||    
T  4907902 aattaagtatatgtttggtcccatttctaaagagtctaaaattgattttgaaggtgtagaattgatt 4907968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 1499761 - 1499821
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgattatg 120  Q
    |||||||| || ||||||||  ||| |||||||| |||||||| |||||||||||||||||    
T  1499761 tatgtttggtttcacttctattgggaccaaaattaattatgtaagtgtagaattgattatg 1499821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 17225894 - 17225938
Alignment:
Q  208 aattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    |||||| ||||||| ||||||||||||||||||||| ||||||||    
T  17225894 aattgatttttacatacaaatttatagttcaactcagttttacat 17225938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 318
Target Start/End: Original strand, 3289798 - 3289896
Alignment:
Q  219 acacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaattattttaccgtcaattaacttttagtcataatcaattttatagact 318  Q
    ||||||||||||||| ||||||||||||||||||| |||||| |||  |||||| | |||| |  ||| | ||||| ||||  ||||||||||| |||||    
T  3289798 acacacaaatttataattcaactcacttttacata-atgtatccaaacacaaatcactttatctgcaactcactttaagtcgaaatcaattttacagact 3289896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 4907959 - 4908048
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    ||||||||| ||| |||||| || ||||| |||||||| |||| |||||| || || ||| ||||||||||| ||| ||| ||||||||||    
T  4907959 agaattgattttatttgaagctatgatttgtagtttttgattctataatttaccttcacaaacaaatttataattc-acttacttttacat 4908048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 1485189 - 1485144
Alignment:
Q  208 aattgacttttacacacaaatttatagttcaactcacttttacata 253  Q
    |||||| ||| |||| ||||||||| ||||||||||||||||||||    
T  1485189 aattgattttaacactcaaatttattgttcaactcacttttacata 1485144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 7280539 - 7280588
Alignment:
Q  215 ttttacacacaaatttatagttcaactcacttttacatatatgtattcaa 264  Q
    |||||||||||||||||| |||||| ||||||||| ||| |||| |||||    
T  7280539 ttttacacacaaatttatcgttcaattcacttttatataaatgtcttcaa 7280588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 8860546 - 8860619
Alignment:
Q  208 aattgacttttacacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaattattttacc 281  Q
    |||||| ||| ||||| |||||||| ||||||||||||||| |||  ||||||  ||  |||||||||||||||    
T  8860546 aattgattttgacacataaatttatggttcaactcacttttgcatgaatgtatctaaacacaaattattttacc 8860619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 247
Target Start/End: Original strand, 2748043 - 2748075
Alignment:
Q  215 ttttacacacaaatttatagttcaactcacttt 247  Q
    ||||||||||||||||||||||||| |||||||    
T  2748043 ttttacacacaaatttatagttcaattcacttt 2748075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 6654168 - 6654088
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacata 253  Q
    ||||||||| |||||||| ||| |||| |||| | | |||| ||| ||||| |||||||||||||||  ||||| ||||||    
T  6654168 tacttgaagctaggatttgtagcttttaattctagatttgattttcacacagaaatttatagttcaaaccacttctacata 6654088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 34620928 - 34620980
Alignment:
Q  208 aattgacttttacacacaaatttatagttcaactcacttttacatatatgtat 260  Q
    |||||| ||||||||  ||||||||  ||||||||||||||||||| ||||||    
T  34620928 aattgatttttacactaaaatttatttttcaactcacttttacataaatgtat 34620980  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 34748365 - 34748417
Alignment:
Q  208 aattgacttttacacacaaatttatagttcaactcacttttacatatatgtat 260  Q
    |||||| ||||||||  ||||||||  ||||||||||||||||||| ||||||    
T  34748365 aattgatttttacactaaaatttatttttcaactcacttttacataaatgtat 34748417  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 54173374 - 54173313
Alignment:
Q  192 tagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacata 253  Q
    ||||||||||||| |||||| | ||||||| | |||||||||||||||||||||||||||||    
T  54173374 tagttttttattctataattaatttttacaaataaatttatagttcaactcacttttacata 54173313  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 25359663 - 25359579
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcactt 246  Q
    |||||||||  ||||||||||||| |||| ||||||||||||| |||||||| ||| ||||||| |||||| ||| || ||||||    
T  25359663 agaattgattctacttgaagttagaatttgtagttttttattctataattgattttcacacacatatttattgttaaaatcactt 25359579  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 52364058 - 52364138
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacata 253  Q
    ||||||||| || ||||||||| |||| |||| |||||||| ||| | ||| ||||||| |||||||||||||||||||||    
T  52364058 tacttgaagctatgatttatagcttttgattctataattgattttcaaacataaatttacagttcaactcacttttacata 52364138  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 208 - 258
Target Start/End: Original strand, 4526174 - 4526224
Alignment:
Q  208 aattgacttttacacacaaatttatagttcaactcacttttacatatatgt 258  Q
    |||||| |||||||||||||||||||||||||| |||||||||||| ||||    
T  4526174 aattgatttttacacacaaatttatagttcaacacacttttacataaatgt 4526224  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 32523413 - 32523339
Alignment:
Q  178 gaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    ||||||||||||| ||| |||| |||| | |||||| ||||||||||||||||| |||| ||||||||| |||||    
T  32523413 gaagttaggatttgtagcttttgattctaaaattgatttttacacacaaatttagagtttaactcacttatacat 32523339  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 31708271 - 31708178
Alignment:
Q  219 acacacaaatttatagttcaactcacttttacatatatgtattcaagaacaaattattttaccgtcaattaacttttagtcataatcaatttta 312  Q
    ||||||||||||||| ||||||||||||||||||  |||||| |||  |||||  | |||| |  ||| | |||||||||| ||||||||||||    
T  31708271 acacacaaatttataattcaactcacttttacatgaatgtatccaaacacaaaccactttatcagcaactcacttttagtcctaatcaatttta 31708178  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 42913052 - 42913139
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaactcacttttaca 251  Q
    |||||||  ||||||||||||  ||||||| |||||||||| | ||||||  |||||| |||| |||||| ||||||| | |||||||    
T  42913052 aattgattatacttgaagttataatttataattttttattctagaattgatctttacaaacaattttatatttcaacttatttttaca 42913139  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 52363960 - 52364018
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatta 118  Q
    |||||||| |||||||| || |||| ||||||||||||||  ||||||| |||||||||    
T  52363960 tatgtttggttccacttttagagggaccaaaattgattatagaggtgtataattgatta 52364018  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 46853577 - 46853532
Alignment:
Q  208 aattgacttttacacacaaatttatagttcaactcacttttacata 253  Q
    |||||| ||| |||| ||||||||| ||||||||||||||||||||    
T  46853577 aattgattttaacactcaaatttattgttcaactcacttttacata 46853532  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 47356322 - 47356257
Alignment:
Q  174 acttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcaa 239  Q
    ||||||||||| |||||||||| ||| |||  | |||||| ||||||||| ||||||| |||||||    
T  47356322 acttgaagttaagatttatagtctttgattatagaattgatttttacacataaatttaaagttcaa 47356257  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 35253510 - 35253466
Alignment:
Q  208 aattgacttttacacacaaatttatagttcaactcacttttacat 252  Q
    |||||| |||||||| |||||||||  ||||||||||||||||||    
T  35253510 aattgatttttacactcaaatttatcattcaactcacttttacat 35253466  T

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Target: scaffold0168 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 260
Target Start/End: Original strand, 31721 - 31923
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgattatg-catgtgtggttg-----gagtagaattgattttgcctc 153  Q
    |||||||| ||||||||||| || | |||||||||||| |  |||||||||||||||| || ||||| ||||||     ||||| |||||||| ||||||    
T  31721 tatgtttggttccacttctagagtgaccaaaattgattctagaggtgtagaattgattctgacatgtttggttgttgtcgagtaaaattgattctgcctc 31820  T
Q  154 aagaatcaagaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagtt---caactcacttttac 250  Q
          ||| |||||||  ||||||||| |||||||| ||| |||| |||    |||||| ||| ||| ||| ||||||||||   ||||||||||||||    
T  31821 ------caa-aattgattatacttgaagctaggatttgtagcttttgattattgaattgattttcacatacatatttatagttaaacaactcacttttac 31913  T
Q  251 atatatgtat 260  Q
    ||| ||||||    
T  31914 ataaatgtat 31923  T

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Target: scaffold0314 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 17322 - 17381
Alignment:
Q  61 atgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgattatg 120  Q
    ||||||| ||||||||||| ||   |||||||||||| || |||||||||||||||||||    
T  17322 atgtttggttccacttctagagtaaccaaaattgattctggaggtgtagaattgattatg 17381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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