View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13006_low_21 (Length: 436)
Name: NF13006_low_21
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 36633795 - 36634214
Alignment:
| Q |
1 |
aatgaagaacaaaaccgagaatgcttacatgcttctattgcatgaacacttgattaacactcatttttctcatcaattttgaaatgcagaggatgatatt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
36633795 |
aatgaagaacaaaaccgtgaatgcttacatgcttctattgcatgaacacttgattaacactcatttttctcatcaattttgaaatgtagagaatgatatt |
36633894 |
T |
|
| Q |
101 |
atttaactattgatagaatataagaaagggttgcattcttaggatagttccattagatgtgattttggtttattattgcagtggatgcaatggacttgcc |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36633895 |
atttaacgattgatagaatataagaaagggttgcattcttaggatagttccattcgatgtgattttggtttattattgcagtggatgcaatggacttgcc |
36633994 |
T |
|
| Q |
201 |
attcttaaatgcctatctggattcagtgggctcgccaaatttccatcacggatgcaactttgcagcagcaggttcaactatccttccagcaaatgcagca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36633995 |
attcttaaatgcctatctggattcagtgggctcgccaaatttccatcacggatgcaactttgcagcagcaggttcaactatccttccagcaaatgcagca |
36634094 |
T |
|
| Q |
301 |
tcaatcagtccatttggatttggcactcaggtaaatcagtttctgctattcaaagccaaggttcttcaagtgcttgcaggtatatgaaaagttaattaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
36634095 |
tcaatcagtccatttggatttggcactcaggtaaatcagtttctgctattcaaagccaaggttcttgaagtgcttgcaggtatatgaaaag----ttaat |
36634190 |
T |
|
| Q |
401 |
tcaaatatttccaagtttgatgat |
424 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
36634191 |
tcaaatatttccaagtttgatgat |
36634214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 177 - 397
Target Start/End: Original strand, 36638732 - 36638950
Alignment:
| Q |
177 |
tgcagtggatgcaatggacttgccattcttaaatgcctatctggattcagtgggctcgccaaatttccatcacggatgcaactttgcagcagcaggttca |
276 |
Q |
| |
|
||||||| |||||| ||||||||||||||| ||||||||| |||||| | |||| ||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
36638732 |
tgcagtgaatgcaacggacttgccattcttgaatgcctatatggatttctttggcttgccaaatttccatcaaggatgcaactttgcagcatcaggttca |
36638831 |
T |
|
| Q |
277 |
actatccttccagcaaatgcagcatcaatcagtccatttggatttggcactcaggtaaatcagtttctgctattcaaagccaaggttcttcaagtgcttg |
376 |
Q |
| |
|
|||||||||||||| || |||| ||||||| || | ||||| ||| ||| ||||||||||||||||||||| ||||||| || | |||| |
|
|
| T |
36638832 |
actatccttccagcc--tgaagcacggttcagtccgttcagctttggggttcaagtatctcagtttctgctattcaaagctcgggttcttgaattacttg |
36638929 |
T |
|
| Q |
377 |
caggtatatgaaaagttaatt |
397 |
Q |
| |
|
||||||||||| |||| |||| |
|
|
| T |
36638930 |
caggtatatgataagtaaatt |
36638950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 290
Target Start/End: Complemental strand, 46938139 - 46938028
Alignment:
| Q |
179 |
cagtggatgcaatggacttgccattcttaaatgcctatctggattcagtgggctcgccaaatttccatcacggatgcaactttgcagcagcaggttcaac |
278 |
Q |
| |
|
||||||||||| |||| || |||||||||||||| ||| |||||||| |||| | ||||||||| | || || ||||| |||||||| |||||||| |
|
|
| T |
46938139 |
cagtggatgcattggatttaccattcttaaatgcatatttggattcattgggtttgccaaattttaggaaaggttgtaacttcgcagcagctggttcaac |
46938040 |
T |
|
| Q |
279 |
tatccttccagc |
290 |
Q |
| |
|
|||||||||||| |
|
|
| T |
46938039 |
tatccttccagc |
46938028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University