View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13006_low_22 (Length: 421)

Name: NF13006_low_22
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13006_low_22
NF13006_low_22
[»] chr8 (1 HSPs)
chr8 (133-418)||(4348911-4349196)
[»] chr7 (1 HSPs)
chr7 (14-132)||(14699615-14699733)
[»] chr6 (1 HSPs)
chr6 (22-128)||(8551572-8551678)
[»] chr5 (4 HSPs)
chr5 (20-131)||(41642871-41642982)
chr5 (22-132)||(4154667-4154777)
chr5 (38-135)||(25439355-25439452)
chr5 (38-102)||(20283752-20283816)
[»] scaffold0854 (1 HSPs)
scaffold0854 (22-133)||(1015-1126)
[»] chr1 (2 HSPs)
chr1 (22-132)||(4229173-4229283)
chr1 (68-133)||(38301206-38301270)
[»] chr4 (1 HSPs)
chr4 (22-132)||(53305254-53305359)


Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 133 - 418
Target Start/End: Original strand, 4348911 - 4349196
Alignment:
Q  133 taagatttaagctgagaaggaaattcgtataaaacacaaattcagaagtatccatttctcgagccaacataaacgtttttaatttaacaccgagggaata 232  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4348911 taagatttaagctgagaaggaaatccgtataaaacacaaattcaggagtatccatttctcgagccaacataaacgtttttaatttaacaccaagggaata 4349010  T
Q  233 tcacttatcaataggacaagaggatgtatttaaaaatctcatcttttaacatattccaatgatttaggcgaaatgcgcgtgttatcaataattttcattt 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4349011 tcacttatcaataggacaagaggatgtatttaaaaatctcatcttttaacatattccaatgatttaggcgaaatgcgcgtgttatcaataattttcattt 4349110  T
Q  333 tgggacaaatgctccatgagatttcctttgaagttcgaattcaacttcaaaagtctttgcctcttaactcttaaggcaactcctcc 418  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4349111 tgggacaaatgctccatgagatttcctttgaagtttgaattcaacttcaaaagtctttgcctcttaactcttaaggcaactcctcc 4349196  T

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Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 14699615 - 14699733
Alignment:
Q  14 aagaagagagagtgtgtgtagtggttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14699615 aagaagagagagtgtgtgtagtggttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttg 14699714  T
Q  114 tgtctagttatcattcctc 132  Q
    |||||||||||||||||||    
T  14699715 tgtctagttatcattcctc 14699733  T

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Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 8551678 - 8551572
Alignment:
Q  22 agagtgtgtgtagtggttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtctagt 121  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8551678 agagagtgtgtagtggttttaccaaactgcccttgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtctaat 8551579  T
Q  122 tatcatt 128  Q
    |||||||    
T  8551578 tatcatt 8551572  T

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Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 41642982 - 41642871
Alignment:
Q  20 agagagtgtgtgtagtggttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtcta 119  Q
    |||||||||||||| ||| |||||||||||||| | |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||    
T  41642982 agagagtgtgtgtattggctttaccaaactgccattgatttgaggttgaaataacaaaattgtccatgatgttgatattgtgtctaaaattttgtgtcta 41642883  T
Q  120 gttatcattcct 131  Q
    ||||||||||||    
T  41642882 gttatcattcct 41642871  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 22 - 132
Target Start/End: Original strand, 4154667 - 4154777
Alignment:
Q  22 agagtgtgtgtagtggttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtctagt 121  Q
    |||| ||| ||||||||||||| || |||||||  | || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4154667 agagggtgcgtagtggttttacaaagctgcccttaacttaaggttgaaataacaaaattgcctatggtgttggtattgtgtctaaaattttgtgtctagt 4154766  T
Q  122 tatcattcctc 132  Q
    |||||||||||    
T  4154767 tatcattcctc 4154777  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 25439452 - 25439355
Alignment:
Q  38 ttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtctagttatcattcctctaa 135  Q
    ||||||| ||||| ||| || || ||||||||||| ||||| | |||||||||||| | ||||| | | ||||||||||||| |||||||| ||||||    
T  25439452 ttttaccgaactgtcctggaattaaggttgaaatatcaaaactacccatggtgttgattttgtggccagaattttgtgtctatttatcatttctctaa 25439355  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 20283752 - 20283816
Alignment:
Q  38 ttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgt 102  Q
    ||||||||||||||||| ||||| |||| |||||  ||||| | |||||||||||| | ||||||    
T  20283752 ttttaccaaactgccctggatttaaggtggaaatgtcaaaactacccatggtgttgattttgtgt 20283816  T

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Target: scaffold0854 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 1126 - 1015
Alignment:
Q  22 agagtgtgtgtagtggttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtctagt 121  Q
    |||| ||||||||||||||||| || |||||||  | || |||||||||| ||||||  ||||||||||||| ||||||||||||||||||||||||| |    
T  1126 agagggtgtgtagtggttttacaaagctgcccttaacttaaggttgaaatgacaaaaaagcccatggtgttgatattgtgtctaaaattttgtgtctaat 1027  T
Q  122 tatcattcctct 133  Q
    ||||||||||||    
T  1026 tatcattcctct 1015  T

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Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 4229283 - 4229173
Alignment:
Q  22 agagtgtgtgtagtggttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtctagt 121  Q
    |||| ||||||| ||||||||| || |||||||  | || |||||||||| ||||||  |||||||||||||||||||||||||||||||||| ||||||    
T  4229283 agagggtgtgtattggttttacaaagctgcccttaacttaaggttgaaatgacaaaaaagcccatggtgttggtattgtgtctaaaattttgtatctagt 4229184  T
Q  122 tatcattcctc 132  Q
    |||||||||||    
T  4229183 tatcattcctc 4229173  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 38301270 - 38301206
Alignment:
Q  68 aaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtctagttatcattcctct 133  Q
    |||| |||||| || ||||||||||||||||||||| |||| |||||| ||||||||| |||||||    
T  38301270 aaatgacaaaactgtccatggtgttggtattgtgtccaaaa-tttgtggctagttatcgttcctct 38301206  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 132
Target Start/End: Original strand, 53305254 - 53305359
Alignment:
Q  22 agagtgtgtgtagtggttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtctagt 121  Q
    |||| |||||| |||||||||| || |||||||  | || |||||||||| |||||| ||     | |||||||||||||| ||||||||||||||||||    
T  53305254 agagggtgtgtggtggttttacaaagctgcccttaacttaaggttgaaatgacaaaactg-----gatgttggtattgtgtttaaaattttgtgtctagt 53305348  T
Q  122 tatcattcctc 132  Q
    |||||||||||    
T  53305349 tatcattcctc 53305359  T

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