View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13006_low_24 (Length: 409)
Name: NF13006_low_24
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_24 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 204 - 392
Target Start/End: Original strand, 32998502 - 32998690
Alignment:
| Q |
204 |
cgatcatgattgaacggccacattgtcccagttgtgtgaatgcggataatccctaatcgtaggggagtcggatccacgatatacatcaattaaataattt |
303 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||| ||| ||| || | ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32998502 |
cgatcatgattgaacgcccacattgtcccaattgtgtgaatgcggagaattcctgattgcaggggagccggatccacgatatacatcaattaaataattt |
32998601 |
T |
|
| Q |
304 |
tcaagctgagtgtttacctccatggttgatccatccttagctaactgttgtgatggagcaaattcaacaatatgatcagtcacagaaag |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32998602 |
tcaagctgagtgtttacctccatggttgatccatccttagctaactgttgtgatggagcaaattcaacaatatgatcagtcacagaaag |
32998690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 55 - 210
Target Start/End: Original strand, 32998261 - 32998422
Alignment:
| Q |
55 |
aaatacttatgcatataaatttggaatgcttaaaatatagcattannnnnnnaagcatt-aagatacatcataattgttctctag--------tgatgat |
145 |
Q |
| |
|
||||||||||||||||||||||| || ||| |||||| ||||||| ||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
32998261 |
aaatacttatgcatataaatttgcaacgctaaaaatagagcattatttt---aagcatttaagatacatcataattgttctctaggagactcttgatgat |
32998357 |
T |
|
| Q |
146 |
attcggattccatacagttagggattctccgtattcatgcagttgggacatcagtagtcgatcat |
210 |
Q |
| |
|
||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
32998358 |
attcggatttcacgcagttagggattctccgcattcatgcagttgggacatcagtagtcgttcat |
32998422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University