View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13006_low_25 (Length: 408)
Name: NF13006_low_25
Description: NF13006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13006_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 6634281 - 6634056
Alignment:
| Q |
1 |
atgagacagaaaccaaagacgtaaacaataatgttgacaatacaagttcagctgctgaggaacaaaaggaaagtgaaagtgtcaaagaggcaggtgttga |
100 |
Q |
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| T |
6634281 |
atgagacagaaaccaaagacataaacaataatgttgacaatacaagttcagctgctgaggaacaaaaggaaattgaaagtgtcaaagaggcaggtgttga |
6634182 |
T |
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| Q |
101 |
agaaaataaggacgatgcagctaaggatgttaaagacagtgaagctatggagaaaataaatgatgaaggaaagaaagaggaggatgttgtggaggaacct |
200 |
Q |
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| T |
6634181 |
agaaaataaggacgatgcagctaaggatgttaaagacggtgaagctatggagaaaataaatgatgaaggaaagaaagaggaggatgttgtggaggaacct |
6634082 |
T |
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| Q |
201 |
tctaaagaaattgagaaaaatgatga |
226 |
Q |
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||| ||| |||||||||| ||||| |
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| T |
6634081 |
tctgctgaagttgagaaaaaagatga |
6634056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 218 - 390
Target Start/End: Complemental strand, 6634124 - 6633952
Alignment:
| Q |
218 |
aaatgatgaagaaaagaaggagaatgatgttgtggaggaaccttctgctgaagttgagaaaaaagatgaacatgcatcgataaagaatgacgagaaaatc |
317 |
Q |
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||||||||||| |||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6634124 |
aaatgatgaaggaaagaaagaggaggatgttgtggaggaaccttctgctgaagttgagaaaaaagatgaccatgcatcgataaagaatgacgagaaaatc |
6634025 |
T |
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| Q |
318 |
aatgctgatgatgctgctggtactgaagaagagaaaaaattggccgaagaaaatgaaaaaggtgtgcataata |
390 |
Q |
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| T |
6634024 |
aatgctgatggtgctgctgatactgaagaagagaaaaaattggccgaagaaaatgaaaaaagtgtgcataata |
6633952 |
T |
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